RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 TMEM225Q6GV28 225 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 TMUB2Q71RG4 321 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 APTXQ7Z2E3 356 aaKnown RBP5.94□□□□□ -1.46
LSM1-202ENST00000520286 CD302Q8IX05 232 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 SLC38A6Q8IZM9 456 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 OR4Q3Q8NH05 313 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 FAM3CQ92520 227 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 SLC41A3Q96GZ6 507 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 PAIP2Q9BPZ3 127 aaKnown RBP5.94□□□□□ -1.46
LSM1-202ENST00000520286 TCHPQ9BT92 498 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 AMBNQ9NP70 447 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 SLCO1B1Q9Y6L6 691 aa5.94□□□□□ -1.46
LSM1-202ENST00000520286 GOLGA6L7A0A1B0GV03 622 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 A0A1B0GVL5 298 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 H7C423 109 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 TPST2O60704 377 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 FAM107AO95990 144 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 HBQ1P09105 142 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 HOXB6P17509 224 aaKnown RBP5.93□□□□□ -1.46
LSM1-202ENST00000520286 SULT1E1P49888 294 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 CSRP3P50461 194 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 TNFRSF17Q02223 184 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 CSTF1Q05048 431 aaKnown RBP5.93□□□□□ -1.46
LSM1-202ENST00000520286 CKAP4Q07065 602 aaKnown RBP5.93□□□□□ -1.46
LSM1-202ENST00000520286 GGTA1PQ4G0N0 100 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 DCST2Q5T1A1 773 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 ACSM5Q6NUN0 579 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 ADAM5Q6NVV9 412 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 DOK6Q6PKX4 331 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 REG3GQ6UW15 175 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 STAC2Q6ZMT1 411 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 BZW1Q7L1Q6 419 aaKnown RBP5.93□□□□□ -1.46
LSM1-202ENST00000520286 ERICH1Q86X53 443 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 FBXL16Q8N461 479 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 BPIFB2Q8N4F0 458 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 MMGT1Q8N4V1 131 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 MREGQ8N565 214 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 CLDN19Q8N6F1 224 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 OR13C2Q8NGS9 318 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 DCPSQ96C86 337 aaKnown RBP5.93□□□□□ -1.46
LSM1-202ENST00000520286 SH3YL1Q96HL8 342 aaPredicted RBP5.93□□□□□ -1.46
LSM1-202ENST00000520286 HEXA-AS1Q9H8Q6 139 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 RAB18Q9NP72 206 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 ELOVL2Q9NXB9 296 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 RPH3ALQ9UNE2 315 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 NTNG1Q9Y2I2 539 aa5.93□□□□□ -1.46
LSM1-202ENST00000520286 ANKRD31Q8N7Z5 1873 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 KIF26BQ2KJY2 2108 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 BTN3A3O00478 584 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 ZNF208O43345 1280 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 BBOX1O75936 387 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 UBTFL1P0CB47 393 aaPredicted RBP5.92□□□□□ -1.46
LSM1-202ENST00000520286 PGCP20142 388 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 ATP5A1P25705 553 aaKnown RBP5.92□□□□□ -1.46
LSM1-202ENST00000520286 ABRAXAS2Q15018 415 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 EXOC3L2Q2M3D2 409 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 ZNF506Q5JVG8 444 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 KCNIP4Q6PIL6 250 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 C16orf62Q7Z3J2 963 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 IFNEQ86WN2 208 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 UBQLNLQ8IYU4 475 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 ABHD12Q8N2K0 398 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 STXBP6Q8NFX7 210 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 ZNF671Q8TAW3 534 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 C9orf85Q96MD7 179 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 AMDHD1Q96NU7 426 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 GON7Q9BXV9 100 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 GCOM2Q9BZD3 368 aaPredicted RBP5.92□□□□□ -1.46
LSM1-202ENST00000520286 FAM120CQ9NX05 1096 aaKnown RBP5.92□□□□□ -1.46
LSM1-202ENST00000520286 C15orf41Q9Y2V0 281 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 MAD1L1Q9Y6D9 718 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 UBN2Q6ZU65 1347 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 SPEF2Q9C093 1822 aa5.92□□□□□ -1.46
LSM1-202ENST00000520286 A0A0D9SFI3 127 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 ERVV-1B6SEH8 477 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 PRR23D1E9PI22 279 aaPredicted RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 PRRG1O14668 218 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 LRRTM2O43300 516 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 TRIM3O75382 744 aaPredicted RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 ATP6V1G2O95670 118 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 PAEPP09466 180 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 PRR23D2P0DMB1 279 aaPredicted RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 IGFBP5P24593 272 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 HPCAL1P37235 193 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 TAGLN2P37802 199 aaKnown RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 GNPDA1P46926 289 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 CCNG1P51959 295 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 ERVK11-1P61568 191 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 ELF3P78545 371 aaPredicted RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 PAX8Q06710 450 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 IL18R1Q13478 541 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 DDX39BQ13838 428 aaKnown RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 CYLC2Q14093 348 aaPredicted RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 STK38Q15208 465 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 LGSNQ5TDP6 509 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 BHLHE23Q8NDY6 225 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 PIWIL1Q96J94 861 aaKnown RBP5.91□□□□□ -1.46
LSM1-202ENST00000520286 CNDP1Q96KN2 507 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 TCEANC2Q96MN5 208 aa5.91□□□□□ -1.46
LSM1-202ENST00000520286 NUP58Q9BVL2 599 aa5.91□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms