RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 ITM2CQ9NQX7 267 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 MBNL1Q9NR56 388 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 MYOTQ9UBF9 498 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 NAT8BQ9UHF3 227 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 FZD10Q9ULW2 581 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 GAB2Q9UQC2 676 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TMX2Q9Y320 296 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PUS1Q9Y606 427 aaKnown RBP eCLIP3.36□□□□□ -1.87
USP53-205ENST00000509769 COL3A1P02461 1466 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 GAGE10A6NGK3 116 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 OR6C75A6NL08 312 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 J3KR12 359 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CLDN4O14493 209 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 NRP1O14786 923 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ARPC1BO15143 372 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 FGF19O95750 216 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ACTL6AO96019 429 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 MT-ATP6P00846 226 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 LTFP02788 710 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 USP17L7P0C7H9 530 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SCGB1A1P11684 91 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 MTHFD2P13995 350 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PTPRAP18433 802 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 UQCRC2P22695 453 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ITPKBP27987 946 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 EPHA2P29317 976 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ID4P47928 161 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 LSSP48449 732 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 DGKEP52429 567 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 WDR4P57081 412 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 SNRPEP62304 92 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 CATR1Q13166 79 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 HTR4Q13639 388 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SERTAD2Q14140 314 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 HABP2Q14520 560 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 AMHR2Q16671 573 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 MPEG1Q2M385 716 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 USP17L2Q6R6M4 530 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ZNF813Q6ZN06 617 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 HTR3DQ70Z44 454 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 NLRC3Q7RTR2 1065 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 OR5D16Q8NGK9 328 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 OR9A4Q8NGU2 314 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CPT1CQ8TCG5 803 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SLC2A12Q8TD20 617 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 WNT8BQ93098 351 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ISL2Q96A47 359 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PYCR2Q96C36 320 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 RPUSD4Q96CM3 377 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 BORCS8Q96FH0 119 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 C5orf34Q96MH7 638 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 UBL7Q96S82 380 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 COLEC11Q9BWP8 271 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 C11orf68Q9H3H3 251 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 SEMA6BQ9H3T3 888 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ZNF768Q9H5H4 540 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 TMEM134Q9H6X4 195 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CHST7Q9NS84 486 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 DNAJB11Q9UBS4 358 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 MIOXQ9UGB7 285 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PURGQ9UJV8 347 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 HSPB8Q9UJY1 196 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PADI3Q9ULW8 664 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 USP22Q9UPT9 525 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TRBC2A0A5B9 178 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CXorf65A6NEN9 183 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TMEM235A6NFC5 223 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 FAM159BA6NKW6 160 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ANKRD30BLA7E2S9 258 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CDRT15L2A8MXV6 281 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SIRPB1O00241 398 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ABCD4O14678 606 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SCAMP3O14828 347 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 LDB2O43679 373 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PDE6DO43924 150 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 LMX1BO60663 402 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PQBP1O60828 265 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 MT-ND6P03923 174 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TCRBP04435 133 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CA3P07451 260 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CYC1P08574 325 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 FGF4P08620 206 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ANXA4P09525 319 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 CTXN2P0C2S0 81 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 EBLN1P0CF75 366 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ACPPP15309 386 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 ST6GAL1P15907 406 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 SRMP19623 302 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 EPHA1P21709 976 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 TNFSF8P32971 234 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 AQP2P41181 271 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CCR2P41597 374 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 RPL29P47914 159 aaKnown RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 CSNK1A1P48729 337 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 CXCR3P49682 368 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 PSEN2P49810 448 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 BCAMP50895 628 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 KLF3P57682 345 aaPredicted RBP3.36□□□□□ -1.87
USP53-205ENST00000509769 CNTN2Q02246 1040 aa3.36□□□□□ -1.87
USP53-205ENST00000509769 MRPL49Q13405 166 aaKnown RBP3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms