RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 PCGF3Q3KNV8 242 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 SCGB2B2Q4G0G5 96 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC36A4Q6YBV0 504 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 BEST3Q8N1M1 668 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 GTPBP8Q8N3Z3 284 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 BHLHE23Q8NDY6 225 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 OR52N2Q8NGI0 321 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 OR4A4PQ8NGN8 299 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 ELP5Q8TE02 316 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC25A43Q8WUT9 341 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 ROBO4Q8WZ75 1007 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 NECAB3Q96P71 396 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 MRIQ9BWK5 157 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 KLHL31Q9H511 634 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 SUV39H2Q9H5I1 410 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 MRPL22Q9NWU5 206 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 FAM120CQ9NX05 1096 aaKnown RBP6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 RASL12Q9NYN1 266 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 STOX2Q9P2F5 926 aaPredicted RBP6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 BACE2Q9Y5Z0 518 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 NPTNQ9Y639 398 aa6.73□□□□□ -1.33
LIMCH1-207ENST00000508466 A0A087WV62 115 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 LOC101059915A0A1B0GWI6 518 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 KANTRA0A1W2PQU2 76 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 A0A1W2PS29 197 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF729A6NN14 1252 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 EFCAB14O75071 495 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 GNRH1P01148 92 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 SERPINA5P05154 406 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 FBP1P09467 338 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 GIPP09681 153 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ZDHHC11BP0C7U3 371 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 F3P13726 295 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 IFNGR1P15260 489 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 RHOQP17081 205 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 MDKP21741 143 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 HSD3B2P26439 372 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 NR0B1P51843 470 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 MANFP55145 182 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CXCL9Q07325 125 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 RAB40BQ12829 278 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 STX4Q12846 297 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 PON3Q15166 354 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CCDC157Q569K6 752 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CD200R1LQ6Q8B3 271 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF783Q6ZMS7 281 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 TMPPEQ6ZT21 453 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 FAM122BQ7Z309 247 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 SPATA2LQ8IUW3 424 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 NLGN1Q8N2Q7 840 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 OR2AK2Q8NG84 335 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 OR5K2Q8NHB8 316 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 HS6ST2Q96MM7 605 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 PTPN18Q99952 460 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 SOX7Q9BT81 388 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 SPATC1LQ9H0A9 340 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 EXO5Q9H790 373 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 IL20Q9NYY1 176 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 A4GNTQ9UNA3 340 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC27A6Q9Y2P4 619 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 KCNK7Q9Y2U2 307 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CACNA1DQ01668 2161 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ALPK3Q96L96 1907 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 TRAV14DV4A0A0A6YYC5 116 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 A0A1B0GTQ1 180 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 A0A1W2PPE2 198 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 TMEM129A0AVI4 362 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 TSPAN11A1L157 253 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 UBE2QL1A1L167 161 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 PRAMEF27A3QJZ7 478 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 NEDD8-MDP1E9PL57 170 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 WRBO00258 174 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 B4GALT2O60909 372 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 FBXO24O75426 580 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 UBL3O95164 117 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 QDPRP09417 244 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 UBCP0CG48 685 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 NR2F1P10589 423 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 PRG2P13727 222 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 S100A7P31151 101 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 HMGA2P52926 109 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 RAB2AP61019 212 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ELAVL2Q12926 359 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CBFBQ13951 182 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 MEF2DQ14814 521 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF805Q5CZA5 627 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ELFN2Q5R3F8 820 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CDCP2Q5VXM1 449 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 REEP3Q6NUK4 255 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 METTL27Q8N6F8 245 aaPredicted RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 FAM98AQ8NCA5 519 aaKnown RBP6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 ZNF485Q8NCK3 441 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 OR8J2Q8NGG1 315 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 OR51A7Q8NH64 312 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 PNPLA2Q96AD5 504 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CNTNAP3BQ96NU0 1288 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 SLC25A32Q9H2D1 315 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 CAPN10Q9HC96 672 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 MIEF1Q9NQG6 463 aa6.72□□□□□ -1.33
LIMCH1-207ENST00000508466 MARCH2Q9P0N8 246 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms