RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 FAHD1Q6P587 224 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 TMPRSS9Q7Z410 1059 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 SIAH3Q8IW03 269 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 DDOQ99489 341 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 ERVMER34-1Q9H9K5 563 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 NPIPA1Q9UND3 350 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 KIR2DS5A0A0G2JLQ3 304 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 A0A0G2JNG1 304 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 KIR2DS3K7RE56 304 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 PRR35P0CG20 571 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 KIR2DS5Q14953 304 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 PRR22Q8IZ63 422 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 TCTE3Q8IZS6 198 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 OR2AJ1Q8NGZ0 328 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 WDR20Q8TBZ3 569 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 NEK7Q8TDX7 302 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 ADAMTS14Q8WXS8 1223 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 SFXN2Q96NB2 322 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 C7orf50Q9BRJ6 194 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 PINK1Q9BXM7 581 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 GSKIPQ9P0R6 139 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 ETHE1O95571 254 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 PCGF3Q3KNV8 242 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 FAM111BQ6SJ93 734 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 TECPR1Q7Z6L1 1165 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 GPAT4Q86UL3 456 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 ALG14Q96F25 216 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 SPATA6Q9NWH7 488 aaPredicted RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 CYB5AP00167 134 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 LALBAP00709 142 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 RBMS1P29558 406 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 OR3A2P47893 321 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 EXOSC2Q13868 293 aaKnown RBP15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 KATNB1Q9BVA0 655 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 GLIPR2Q9H4G4 154 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 CDCP1Q9H5V8 836 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 SDHAF2Q9NX18 166 aa15.19■□□□□ 0.02
CCDC88B-209ENST00000494080 hCG_1807616A0A1W2PRN6 198 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 SGCEO43556 437 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 CD160O95971 181 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 EGFP01133 1207 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 XCR1P46094 333 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 GPR143P51810 404 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 ARHGDIBP52566 201 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 TRA2BP62995 288 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 IHHQ14623 411 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 FXNQ16595 210 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 ZBTB37Q5TC79 503 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 C8orf82Q6P1X6 216 aaPredicted RBP15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 APOOLQ6UXV4 268 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 TMEM150AQ86TG1 271 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 PLXDC1Q8IUK5 500 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 PRRC1Q96M27 445 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 ACER3Q9NUN7 267 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 NEU3Q9UQ49 428 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 CIB4A0PJX0 185 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 FAM171A2A8MVW0 826 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 PSMB1P20618 241 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 BTG1P62324 171 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 FAM69AQ5T7M9 428 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 HBMQ6B0K9 141 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 MAFIPQ8WZ33 124 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 HS6ST2Q96MM7 605 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 TMEM43Q9BTV4 400 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 PRR14Q9BWN1 585 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 FER1L6Q2WGJ9 1857 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNFX1Q9P2E3 1918 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 EEF1E1-BLOC1S5C9J1V9 151 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 CASC3O15234 703 aaKnown RBP15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 MAS1P04201 325 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 ETV5P41161 510 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 CD276Q5ZPR3 534 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 FAM71E1Q6IPT2 247 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 MCEMP1Q8IX19 187 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 OR1E3Q8WZA6 343 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 MYADMQ96S97 322 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 SLC25A18Q9H1K4 315 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 ZNF304Q9HCX3 659 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 SPTA1P02549 2419 aa15.18■□□□□ 0.02
CCDC88B-209ENST00000494080 NAP1L6A6NFF2 107 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 SIX6O95475 246 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 VEGFCP49767 419 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 MRPS21P82921 87 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 GPR18Q14330 331 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 KIAA1958Q8N8K9 716 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 OR52R1Q8NGF1 315 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 CD300LFQ8TDQ1 290 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 MRPL38Q96DV4 380 aaKnown RBP15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 ATG5Q9H1Y0 275 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 SYT4Q9H2B2 425 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 BIN3Q9NQY0 253 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 C1orf196B1AJZ1 125 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 PRAMEF2O60811 474 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 PRSS23O95084 383 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 PPP1R3DO95685 299 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 PGAM2P15259 253 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 BCL6P41182 706 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 TNFRSF4P43489 277 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 SLC6A9P48067 706 aa15.17■□□□□ 0.02
CCDC88B-209ENST00000494080 GAS6Q14393 721 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms