RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 NDUFB2O95178 105 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 UBL4AP11441 157 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 ARHGAP40Q5TG30 622 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 TSSK4Q6SA08 328 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 APOOLQ6UXV4 268 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 ATP6V1C2Q8NEY4 427 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 ASB15Q8WXK1 588 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 CCDC74AQ96AQ1 378 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 ERMAPQ96PL5 475 aaPredicted RBP19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 DCLRE1CQ96SD1 692 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 TBX5Q99593 518 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 TMED9Q9BVK6 235 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 ZNF768Q9H5H4 540 aaKnown RBP19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 FBXL4Q9UKA2 621 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 GSTK1Q9Y2Q3 226 aa19.34■□□□□ 0.69
CCDC88B-208ENST00000492980 IGKV1D-42A0A075B6H8 117 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 A0A1B0GX78 115 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 RGS5O15539 181 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 PPM1BO75688 479 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 IFNGP01579 166 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 HNRNPCP07910 306 aaKnown RBP eCLIP19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 HPGDP15428 266 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 ARRB1P49407 418 aaPredicted RBP19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 SLC16A1P53985 500 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 PSPHP78330 225 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 BDH1Q02338 343 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 WBP2NLQ6ICG8 309 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 OR10H4Q8NGA5 316 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 PHOSPHO1Q8TCT1 267 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 SDHCQ99643 169 aaPredicted RBP19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 DPYSL5Q9BPU6 564 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 ADGRL4Q9HBW9 690 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 EXOSC3Q9NQT5 275 aaKnown RBP19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 INPP5EQ9NRR6 644 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 FGF21Q9NSA1 209 aa19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 PLEKHB1Q9UF11 243 aaPredicted RBP19.33■□□□□ 0.69
CCDC88B-208ENST00000492980 FER1L5A0AVI2 2057 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 ARID1BQ8NFD5 2236 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 SDK1Q7Z5N4 2213 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 DAPL1A0PJW8 107 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 MCIDASD6RGH6 385 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 GALEQ14376 348 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 CBLN3Q6UW01 205 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 LAX1Q8IWV1 398 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 WDFY2Q96P53 400 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 GAL3ST4Q96RP7 486 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 CCNL2Q96S94 520 aaPredicted RBP19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 COQ7Q99807 217 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 KATNB1Q9BVA0 655 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 SLC19A3Q9BZV2 496 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 ASB6Q9NWX5 421 aa19.33■□□□□ 0.68
CCDC88B-208ENST00000492980 RP1P56715 2156 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 SNX4O95219 450 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 MRPL3P09001 348 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 SBK2P0C263 348 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 EBPQ15125 230 aaKnown RBP19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 NSDHLQ15738 373 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 YOD1Q5VVQ6 348 aaPredicted RBP19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 C9orf40Q8IXQ3 194 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 PRSS58Q8IYP2 241 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 PRR22Q8IZ63 422 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 BABAM2Q9NXR7 383 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 HAO2Q9NYQ3 351 aa19.32■□□□□ 0.68
CCDC88B-208ENST00000492980 C2orf92A0A1B0GVN3 265 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 OR7A10O76100 309 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 HLA-DPB1P04440 258 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 GYPBP06028 91 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 HIST1H1CP16403 213 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 LYSMD4Q5XG99 296 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 ATG4DQ86TL0 474 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 UBALD2Q8IYN6 164 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 OR52E2Q8NGJ4 325 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 OR14A16Q8NHC5 309 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 ADOQ96SZ5 270 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 HDHD5Q9BXW7 423 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 SP140LQ9H930 580 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 MRTO4Q9UKD2 239 aaKnown RBP19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF337Q9Y3M9 751 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 CMAHPQ9Y471 501 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 IER3IP1Q9Y5U9 82 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 SLC35F4A4IF30 521 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 GABRPO00591 440 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 ZNF264O43296 627 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 GAAP10253 952 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 CCR4P51679 360 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 DCAF7P61962 342 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 DESI1Q6ICB0 168 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 C7orf57Q8NEG2 295 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 SDR9C7Q8NEX9 313 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 OR4K13Q8NH42 304 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 LRFN5Q96NI6 719 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 NRSN2Q9GZP1 204 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 VN1R1Q9GZP7 353 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 TRAPPC4Q9Y296 219 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 SIRT4Q9Y6E7 314 aaPredicted RBP19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 V9GYH0 126 aa19.31■□□□□ 0.68
CCDC88B-208ENST00000492980 ELOA3DA6NLF2 546 aaPredicted RBP19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 ICOSLGO75144 302 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 PNMTP11086 282 aa19.3■□□□□ 0.68
CCDC88B-208ENST00000492980 EPHA8P29322 1005 aaPredicted RBP19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms