RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 WBP2NLQ6ICG8 309 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 KIRREL2Q6UWL6 708 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 TMPRSS11AQ6ZMR5 421 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 DPY19L2P2Q6ZN68 376 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 TMEM151BQ8IW70 566 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 PARP16Q8N5Y8 322 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 SLC37A3Q8NCC5 494 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 OR4F15Q8NGB8 312 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 OR13C2Q8NGS9 318 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 C3orf49Q96BT1 292 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 ZNF501Q96CX3 271 aaPredicted RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 SGTBQ96EQ0 304 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 LCORQ96JN0 433 aaPredicted RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 KCTD7Q96MP8 289 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 PTCHD1Q96NR3 888 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 TEAD3Q99594 435 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 ELF4Q99607 663 aaPredicted RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 DPYSL5Q9BPU6 564 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CNPPD1Q9BV87 410 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 DUSP23Q9BVJ7 150 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 RBCK1Q9BYM8 510 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 BARHL1Q9BZE3 327 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 SMOC1Q9H4F8 434 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CPNE5Q9HCH3 593 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 ZNF304Q9HCX3 659 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 QPCTLQ9NXS2 382 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 CHRNA9Q9UGM1 479 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 KLHL21Q9UJP4 597 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 PPIEQ9UNP9 301 aaKnown RBP9.85□□□□□ -0.83
USP4-214ENST00000491791 CARD8Q9Y2G2 431 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 GSTK1Q9Y2Q3 226 aa9.85□□□□□ -0.83
USP4-214ENST00000491791 FAM208BQ5VWN6 2430 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 A0A1B0GX78 115 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 FUOMA2VDF0 154 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 RIIAD1A6NNX1 92 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 C4orf47A7E2U8 309 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 PRR23D1E9PI22 279 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 SOCS6O14544 535 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SEC14L5O43304 696 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 CH25HO95992 272 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 IFNA16P05015 189 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 PRR23D2P0DMB1 279 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 ZNF3P17036 446 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 PTBP1P26599 531 aaKnown RBP eCLIP9.84□□□□□ -0.83
USP4-214ENST00000491791 SLC6A8P48029 635 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ARRB1P49407 418 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 BCAP31P51572 246 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 TAS2R43P59537 309 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 RPS3AP61247 264 aaKnown RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 SKP2Q13309 424 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 COL9A2Q14055 689 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 TRIM16LQ309B1 348 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 TBC1D25Q3MII6 688 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SLC35D3Q5M8T2 416 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SPANXN2Q5MJ10 180 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 OR2G6Q5TZ20 316 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 NKAIN2Q5VXU1 208 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 PEAR1Q5VY43 1037 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 TCEAL6Q6IPX3 200 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 PLBD1Q6P4A8 553 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 TMEM71Q6P5X7 295 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 TTLL10Q6ZVT0 673 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 RABEPKQ7Z6M1 372 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ZNF554Q86TJ5 538 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ATG4DQ86TL0 474 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 OAFQ86UD1 273 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ZBTB46Q86UZ6 589 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 LYSMD2Q8IV50 215 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 GPALPP1Q8IXQ4 340 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 GPR135Q8IZ08 494 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ZNF441Q8N8Z8 693 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 BBS1Q8NFJ9 593 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 OR4C6Q8NH72 309 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 GATAD2BQ8WXI9 593 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 DAZLQ92904 295 aaKnown RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 TCEAL3Q969E4 200 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 KIAA1143Q96AT1 154 aaPredicted RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 TNFRSF13CQ96RJ3 184 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SECISBP2Q96T21 854 aaKnown RBP9.84□□□□□ -0.83
USP4-214ENST00000491791 NDC1Q9BTX1 674 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 IFT27Q9BW83 186 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 NMNAT2Q9BZQ4 307 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 LAT2Q9GZY6 243 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ADAM19Q9H013 955 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SMURF1Q9HCE7 757 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 TMEM9BQ9NQ34 198 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 BABAM2Q9NXR7 383 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 RPS6KB2Q9UBS0 482 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SRPK3Q9UPE1 567 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 SLC6A5Q9Y345 797 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 OR10H1Q9Y4A9 318 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 PCDHGB6Q9Y5F9 930 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 NOX1Q9Y5S8 564 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ADAMTS20P59510 1910 aa9.84□□□□□ -0.83
USP4-214ENST00000491791 ZFHX4Q86UP3 3567 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 PCDH15Q96QU1 1955 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 LAMA1P25391 3075 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 A0A1B0GVT2 93 aa9.83□□□□□ -0.84
USP4-214ENST00000491791 WWP2O00308 870 aa9.83□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms