RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 LRIF1Q5T3J3 769 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 RNF220Q5VTB9 566 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 ANKRD34AQ69YU3 496 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 STAC2Q6ZMT1 411 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 NUFIP2Q7Z417 695 aaKnown RBP13.43□□□□□ -0.26
USP39-217ENST00000491659 VRK2Q86Y07 508 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 FUNDC1Q8IVP5 155 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 DDIT4LQ96D03 193 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 PIK3IP1Q96FE7 263 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 FOXC2Q99958 501 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 SIKE1Q9BRV8 207 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 OR10A4Q9H209 315 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 RABEP2Q9H5N1 569 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 PLEKHF2Q9H8W4 249 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 A4GALTQ9NPC4 353 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 EMC3Q9P0I2 261 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 GPR52Q9Y2T5 361 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 TMED7Q9Y3B3 224 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 HDGFL3Q9Y3E1 203 aa13.43□□□□□ -0.26
USP39-217ENST00000491659 DEFB108AA8MXU0 73 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 DNPH1O43598 174 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 PMS2P2O95744 297 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 HOXB9P17482 250 aaPredicted RBP13.42□□□□□ -0.26
USP39-217ENST00000491659 CCNA2P20248 432 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 PSMB1P20618 241 aaKnown RBP13.42□□□□□ -0.26
USP39-217ENST00000491659 TACR3P29371 465 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 SLC1A3P43003 542 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 COPZ1P61923 177 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 PRAMEF8Q5VWM4 474 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 PRAMEF7Q5VXH5 474 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 ABLIM2Q6H8Q1 611 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 CXorf67Q86X51 503 aaPredicted RBP13.42□□□□□ -0.26
USP39-217ENST00000491659 ADGRG3Q86Y34 549 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 STEAP2Q8NFT2 490 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 BBS10Q8TAM1 723 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 THOC1Q96FV9 657 aaKnown RBP13.42□□□□□ -0.26
USP39-217ENST00000491659 OR11A1Q9GZK7 315 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 ACTR6Q9GZN1 396 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 NPHS2Q9NP85 383 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 ZNF232Q9UNY5 417 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 TRIM33Q9UPN9 1127 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 CORO2BQ9UQ03 480 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 IFT52Q9Y366 437 aa13.42□□□□□ -0.26
USP39-217ENST00000491659 TMEM72A0PK05 275 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 ZNF724A8MTY0 619 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 SIAH2O43255 324 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 ZNF208O43345 1280 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 EDF1O60869 148 aaKnown RBP13.41□□□□□ -0.26
USP39-217ENST00000491659 ATE1O95260 518 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 NUDT7P0C024 238 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 GKN3PP0CG01 181 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 BMP2P12643 396 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 NCF2P19878 526 aaPredicted RBP13.41□□□□□ -0.26
USP39-217ENST00000491659 IL32P24001 234 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 OR3A2P47893 321 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 MAP2K6P52564 334 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 OR2B6P58173 313 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 PAGE3Q5JUK9 113 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 GCNT6Q5T4J0 391 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 GALNT5Q7Z7M9 940 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 MTDHQ86UE4 582 aaKnown RBP13.41□□□□□ -0.26
USP39-217ENST00000491659 PIGXQ8TBF5 258 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 MAL2Q969L2 176 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 DNAJA3Q96EY1 480 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 ARL5BQ96KC2 179 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 ALPK1Q96QP1 1244 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 ZNF300Q96RE9 604 aaPredicted RBP13.41□□□□□ -0.26
USP39-217ENST00000491659 SPATA9Q9BWV2 254 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 BCL2L10Q9HD36 194 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 RLIMQ9NVW2 624 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 SLC25A37Q9NYZ2 338 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 TMEM181Q9P2C4 612 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.41□□□□□ -0.26
USP39-217ENST00000491659 DCTN4Q9UJW0 460 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 OSGIN1Q9UJX0 560 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 PRDM4Q9UKN5 801 aa13.41□□□□□ -0.26
USP39-217ENST00000491659 AKAP9Q99996 3911 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 AKAP6Q13023 2319 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 A0A0G2JND7 137 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 A0A1W2PP18 115 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 A0A1W2PPR1 153 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 GCM2O75603 506 aaPredicted RBP13.4□□□□□ -0.26
USP39-217ENST00000491659 ARAFP10398 606 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 KLK2P20151 261 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 CXCR1P25024 350 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 SLC35A1P78382 337 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 PDK3Q15120 406 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 BEX5Q5H9J7 111 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 ZNF311Q5JNZ3 666 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 WBP2NLQ6ICG8 309 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 WFDC8Q8IUA0 241 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 MSRB3Q8IXL7 192 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 ZNF100Q8IYN0 542 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 GABRG1Q8N1C3 465 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 CADM2Q8N3J6 435 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 MBD6Q96DN6 1003 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 HDHD5Q9BXW7 423 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 CXXC4Q9H2H0 198 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 VAPAQ9P0L0 249 aa13.4□□□□□ -0.26
USP39-217ENST00000491659 LEF1Q9UJU2 399 aaPredicted RBP13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms