RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 CLEC1AQ8NC01 280 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 ZNF248Q8NDW4 579 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 PIK3C3Q8NEB9 887 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 CATSPER1Q8NEC5 780 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 OR5M3Q8NGP4 307 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 OR5K1Q8NHB7 308 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 NR4A3Q92570 626 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 EME1Q96AY2 570 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 TMCO6Q96DC7 493 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 ARSGQ96EG1 525 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 SECISBP2Q96T21 854 aaKnown RBP6.06□□□□□ -1.44
USP48-208ENST00000479177 EPYCQ99645 322 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 MCHR1Q99705 422 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 CIB1Q99828 191 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 FUZQ9BT04 418 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 BDH2Q9BUT1 245 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 C9orf16Q9BUW7 83 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 TBL1XR1Q9BZK7 514 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 POLR2J2Q9GZM3 115 aaKnown RBP6.06□□□□□ -1.44
USP48-208ENST00000479177 LAT2Q9GZY6 243 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 LHPPQ9H008 270 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 GABARAPL1Q9H0R8 117 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 POLR2J3Q9H1A7 115 aaKnown RBP6.06□□□□□ -1.44
USP48-208ENST00000479177 REEP1Q9H902 201 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 SH2D2AQ9NP31 389 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 DKK4Q9UBT3 224 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 POLHQ9Y253 713 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 NTNG1Q9Y2I2 539 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 SAMHD1Q9Y3Z3 626 aaKnown RBP6.06□□□□□ -1.44
USP48-208ENST00000479177 FAM32AQ9Y421 112 aaKnown RBP6.06□□□□□ -1.44
USP48-208ENST00000479177 CHCHD2Q9Y6H1 151 aaPredicted RBP6.06□□□□□ -1.44
USP48-208ENST00000479177 PCNX3Q9H6A9 2034 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 EML6Q6ZMW3 1958 aa6.06□□□□□ -1.44
USP48-208ENST00000479177 ITPR1Q14643 2758 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ASPMQ8IZT6 3477 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 IGLV3-32A0A0A0MS00 114 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 A0A0B4J2E0 115 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 TRBV4-1A0A0J9YWV2 114 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 A0A1B0GWA3 101 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 A0A1B0GX12 115 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 A0A1W2PRQ8 180 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 TRAPPC13A5PLN9 417 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ARRDC5A6NEK1 342 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 CPSF4LA6NMK7 179 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 B4DXG7 233 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 PDLIM1O00151 329 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 GTPBP1O00178 669 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 TNFRSF11BO00300 401 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 FAAHO00519 579 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 SOCS2O14508 198 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 GNGT2O14610 69 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 EI24O14681 340 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 TP53I11O14683 189 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 KLK10O43240 276 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ZNF264O43296 627 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 HCRTR2O43614 444 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 EIF4E2O60573 245 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 GADD45GO95257 159 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 RASAL1O95294 804 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ANGPTL1O95841 491 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 THY1P04216 161 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 SCG5P05408 212 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 H1F0P07305 194 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 ADRB1P08588 477 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 CCL3P10147 92 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ELAVL4P26378 380 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 MST1P26927 711 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 HLCSP50747 726 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 HMGA2P52926 109 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 SUMO3P55854 103 aaPredicted RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 SOX8P57073 446 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 SMIM11AP58511 58 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 TAS2R41P59536 307 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 RPP38P78345 283 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 PPP1R8Q12972 351 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 SNTA1Q13424 505 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 PIN1Q13526 163 aaPredicted RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 DGCR6Q14129 220 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 OR1Q1Q15612 314 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 MEP1AQ16819 746 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 LRRC36Q1X8D7 754 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 EXOC3L2Q2M3D2 409 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 FGD3Q5JSP0 725 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 COLEC12Q5KU26 742 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ENTPD8Q5MY95 495 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ZNF613Q6PF04 617 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 SHQ1Q6PI26 577 aaKnown RBP6.05□□□□□ -1.44
USP48-208ENST00000479177 CBLN3Q6UW01 205 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 IL20RBQ6UXL0 311 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 IZUMO2Q6UXV1 221 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 RTL4Q6ZR62 310 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 ZNF550Q7Z398 422 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 HIPK1Q86Z02 1210 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 GALNT16Q8N428 558 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 CBR4Q8N4T8 237 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 TMEM156Q8N614 296 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 PACRGLQ8N7B6 248 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 TOR1AIP2Q8NFQ8 470 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 PHOSPHO1Q8TCT1 267 aa6.05□□□□□ -1.44
USP48-208ENST00000479177 PAQR8Q8TEZ7 354 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms