RNA–Protein interactions for RNA: ENST00000476169.1

VPS13D-207, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-207ENST00000476169 KIR3DL3Q8N743 410 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 Q8N9P0 234 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 B3GNT7Q8NFL0 401 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 OR4A15Q8NGL6 344 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 OR4A4PQ8NGN8 299 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 MARCH1Q8TCQ1 289 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 CD300LFQ8TDQ1 290 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 ACMSDQ8TDX5 336 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 TRUB1Q8WWH5 349 aaKnown RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 RCHY1Q96PM5 261 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 MBOAT4Q96T53 435 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 CNN2Q99439 309 aaKnown RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 PAIP2Q9BPZ3 127 aaKnown RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 KCNS3Q9BQ31 491 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 NIPSNAP3BQ9BS92 247 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 RAB34Q9BZG1 259 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 SMYD3Q9H7B4 428 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 UGT1A10Q9HAW8 530 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 DYRK4Q9NR20 520 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 IFNKQ9P0W0 207 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 KCNG2Q9UJ96 466 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 TMCO1Q9UM00 188 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 BARX2Q9UMQ3 279 aaPredicted RBP3.53□□□□□ -1.84
VPS13D-207ENST00000476169 COPS3Q9UNS2 423 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 MAGI3Q5TCQ9 1506 aa3.53□□□□□ -1.84
VPS13D-207ENST00000476169 TROQ12816 1431 aaPredicted RBP3.53□□□□□ -1.85
VPS13D-207ENST00000476169 CASKIN1Q8WXD9 1431 aa3.53□□□□□ -1.85
VPS13D-207ENST00000476169 YEATS2Q9ULM3 1422 aa3.53□□□□□ -1.85
VPS13D-207ENST00000476169 MAP3K19Q56UN5 1328 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 GLI2P10070 1586 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 IGHV4-4A0A075B6R2 117 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 IGKV2D-30A0A075B6S6 120 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 CCDC182A6NF36 153 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 IGLON5A6NGN9 336 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 MSGN1A6NI15 193 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 LRRIQ3A6PVS8 624 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SERPINE3A8MV23 424 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 NPIPB9F8W1W9 429 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 PPP1R2P9O14990 202 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 TOM1O60784 492 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 PFKFB2O60825 505 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 OXSR1O95747 527 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 PRSS1P07477 247 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 CLTAP09496 248 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 HOXB7P09629 217 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 UBCP0CG48 685 aaKnown RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 UMPSP11172 480 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF10P21506 573 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 KITLGP21583 273 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 CD80P33681 288 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 MAP2K2P36507 400 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 PSMD4P55036 377 aaKnown RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 RIPK4P57078 832 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 RAB10P61026 200 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 YWHAEP62258 255 aaKnown RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 TPM4P67936 248 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 ST3GAL3Q11203 375 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SLAQ13239 276 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 KIAA0141Q14154 515 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 GPR176Q14439 515 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 MTF1Q14872 753 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SLC15A2Q16348 729 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 MS4A18Q3C1V0 323 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF672Q499Z4 452 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 FFAR4Q5NUL3 377 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 LGSNQ5TDP6 509 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 WDR25Q64LD2 544 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 OR52W1Q6IF63 320 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 DEGS2Q6QHC5 323 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SASS6Q6UVJ0 657 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 STOX1Q6ZVD7 989 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SLC16A14Q7RTX9 510 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 PQLC3Q8N755 202 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 C15orf54Q8N8G6 183 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 OR4F6Q8NGB9 312 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 OR52I1Q8NGK6 324 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 IL1F10Q8WWZ1 152 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 ASB9Q96DX5 294 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 RNF2Q99496 336 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 P2RY13Q9BPV8 354 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 RHBGQ9H310 441 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 ZNF334Q9HCZ1 680 aaPredicted RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 IL1RAPQ9NPH3 570 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 B3GAT2Q9NPZ5 323 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 CIDEBQ9UHD4 219 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 MGAT4AQ9UM21 535 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 ICAM5Q9UMF0 924 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 FLVCR2Q9UPI3 526 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SCML2Q9UQR0 700 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 EXOGQ9Y2C4 368 aaKnown RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 NTNG1Q9Y2I2 539 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 MRPS18CQ9Y3D5 142 aaKnown RBP3.52□□□□□ -1.85
VPS13D-207ENST00000476169 FBXO7Q9Y3I1 522 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 CSNK1G3Q9Y6M4 447 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 PLCH2O75038 1416 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 FMN1Q68DA7 1419 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 SCAPERQ9BY12 1400 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 TRAPPC8Q9Y2L5 1435 aa3.52□□□□□ -1.85
VPS13D-207ENST00000476169 EFCAB5A4FU69 1503 aa3.51□□□□□ -1.85
VPS13D-207ENST00000476169 ARHGEF12Q9NZN5 1544 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms