RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, human

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VARS-223	ENST00000474643	SLC38A1	Q9H2H9	487 aa		13.52	□□□□□ -0.25
VARS-223	ENST00000474643	SLC25A37	Q9NYZ2	338 aa		13.52	□□□□□ -0.25
VARS-223	ENST00000474643	VAPA	Q9P0L0	249 aa		13.52	□□□□□ -0.25
VARS-223	ENST00000474643	KCNE5	Q9UJ90	142 aa		13.52	□□□□□ -0.25
VARS-223	ENST00000474643	GPC6	Q9Y625	555 aa	Predicted RBP	13.52	□□□□□ -0.25
VARS-223	ENST00000474643	NF1	P21359	2839 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	DEFB108A	A8MXU0	73 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	ADAMDEC1	O15204	470 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	CGA	P01215	116 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	DBI	P07108	87 aa	Known RBP	13.51	□□□□□ -0.25
VARS-223	ENST00000474643	PGC	P20142	388 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	MVD	P53602	400 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	NR1H2	P55055	460 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	KCNJ10	P78508	379 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	KRT72	Q14CN4	511 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	ACKR1	Q16570	336 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	BEX5	Q5H9J7	111 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643		Q5PR19	223 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	GCNT6	Q5T4J0	391 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	DPP10	Q8N608	796 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	FBXO27	Q8NI29	283 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	SLC38A5	Q8WUX1	472 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	PMM1	Q92871	262 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	ZG16B	Q96DA0	208 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	PERP	Q96FX8	193 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	C18orf12	Q96KH6	178 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	ACTR6	Q9GZN1	396 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	PLSCR4	Q9NRQ2	329 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	ICAM5	Q9UMF0	924 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	ZNF232	Q9UNY5	417 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643	GMEB1	Q9Y692	573 aa		13.51	□□□□□ -0.25
VARS-223	ENST00000474643		A0A0G2JPF8	293 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643		A0A0J9YW62	118 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	LOC100653049	A0A140TA62	436 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	AGAP5	A6NIR3	686 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	HNRNPCL2	B2RXH8	293 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	HNRNPCL3	B7ZW38	293 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	HNRNPCL1	O60812	293 aa	Known RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643	KRT34	O76011	436 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	NUDT7	P0C024	238 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	TFPT	P0C1Z6	253 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	LINGO3	P0C6S8	592 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	HNRNPCL4	P0DMR1	293 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	IL32	P24001	234 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	ADH6	P28332	368 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	AGTR1	P30556	359 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	RYK	P34925	604 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	MNAT1	P51948	309 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	SELENBP1	Q13228	472 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	SKP2	Q13309	424 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	CYLC2	Q14093	348 aa	Predicted RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643	LARS2	Q15031	903 aa	Known RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643	QPRT	Q15274	297 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	ZNF239	Q16600	458 aa	Known RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643	TMEM176B	Q3YBM2	270 aa	Predicted RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643	LIN52	Q52LA3	116 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	RPS26P11	Q5JNZ5	115 aa	Predicted RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643	BIVM	Q86UB2	503 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	SNX32	Q86XE0	403 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	MSRB3	Q8IXL7	192 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	OR52P1P	Q8NH57	321 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	GPR119	Q8TDV5	335 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	ROBO4	Q8WZ75	1007 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	MAL2	Q969L2	176 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	CGREF1	Q99674	301 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	ARMC7	Q9H6L4	198 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	A4GALT	Q9NPC4	353 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	NGB	Q9NPG2	151 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	SERINC1	Q9NRX5	453 aa		13.5	□□□□□ -0.25
VARS-223	ENST00000474643	ZNF469	Q96JG9	3925 aa	Predicted RBP	13.5	□□□□□ -0.25
VARS-223	ENST00000474643		A0A1W2PPR1	153 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	CLDN24	A6NM45	220 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	FAM171A2	A8MVW0	826 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	INHBB	P09529	407 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	UQCRB	P14927	111 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	HOXB9	P17482	250 aa	Predicted RBP	13.49	□□□□□ -0.25
VARS-223	ENST00000474643	PGM1	P36871	562 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	MTPN	P58546	118 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	CBX1	P83916	185 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	CAPRIN1	Q14444	709 aa	Known RBP	13.49	□□□□□ -0.25
VARS-223	ENST00000474643	TOMM34	Q15785	309 aa	Predicted RBP	13.49	□□□□□ -0.25
VARS-223	ENST00000474643	CYP51A1	Q16850	503 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	CTU2	Q2VPK5	515 aa	Known RBP	13.49	□□□□□ -0.25
VARS-223	ENST00000474643	RUNDC3A	Q59EK9	446 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	DLEU7	Q6UYE1	221 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	PLEKHM3	Q6ZWE6	761 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	FCRLA	Q7L513	359 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	RETREG3	Q86VR2	466 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	CMIP	Q8IY22	773 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	PCYOX1L	Q8NBM8	494 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	STEAP2	Q8NFT2	490 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	NFKBID	Q8NI38	313 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	BBS10	Q8TAM1	723 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	POC1B	Q8TC44	478 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	ABHD3	Q8WU67	409 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	TMEM234	Q8WY98	164 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	ARSG	Q96EG1	525 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	ADGRG7	Q96K78	797 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	NPAS1	Q99742	590 aa		13.49	□□□□□ -0.25
VARS-223	ENST00000474643	KLHDC3	Q9BQ90	382 aa		13.49	□□□□□ -0.25

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