RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 HNRNPCL1O60812 293 aaKnown RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 GCM2O75603 506 aaPredicted RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 HNRNPCL4P0DMR1 293 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 RPS4Y1P22090 263 aaKnown RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 IDH2P48735 452 aaKnown RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 CRISP3P54108 245 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 NKX6-1P78426 367 aaPredicted RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 SYPL1Q16563 259 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 SLC9B1Q4ZJI4 515 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 PRAMEF8Q5VWM4 474 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 PRAMEF7Q5VXH5 474 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 ANKRD34AQ69YU3 496 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 ZNF550Q7Z398 422 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 ADGRG3Q86Y34 549 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 LRRC8CQ8TDW0 803 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 WDR60Q8WVS4 1066 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 ZNF524Q96C55 264 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 DDIT4LQ96D03 193 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 ZC3HAV1LQ96H79 300 aaKnown RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 INPP5KQ9BT40 448 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 TPT1P8Q9HAU6 139 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 CACYBPQ9HB71 228 aaKnown RBP12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 USH1CQ9Y6N9 552 aa12.92□□□□□ -0.34
NIF3L1-205ENST00000409588 PRRC2AP48634 2157 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CENPVL1A0A0U1RR11 272 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 A0A1W2PPR1 153 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CFAP73A6NFT4 308 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 SMAD9O15198 467 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 SIAH2O43255 324 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 DIAPH2O60879 1101 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 SMPD2O60906 423 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 GSNP06396 782 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 THBDP07204 575 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 FESP07332 822 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 TFPTP0C1Z6 253 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 TFPIP10646 304 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 IL32P24001 234 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 RYKP34925 604 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CDKN2CP42773 168 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CRATP43155 626 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 RNF144AP50876 292 aaPredicted RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 POLR2HP52434 150 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 STX1BP61266 288 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 SLC35A1P78382 337 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 FADDQ13158 208 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 LARS2Q15031 903 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 ADAM5Q6NVV9 412 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 C22orf34Q6ZV56 151 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 NUFIP2Q7Z417 695 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CXorf67Q86X51 503 aaPredicted RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 GOLGA6L1Q8N7Z2 621 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 ANKFN1Q8N957 763 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 PIGXQ8TBF5 258 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 KISS1RQ969F8 398 aaPredicted RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 SLC35B4Q969S0 331 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 ATP6V1G3Q96LB4 118 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 NAA11Q9BSU3 229 aaPredicted RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CCDC28BQ9BUN5 200 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 ADAM19Q9H013 955 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 QRSL1Q9H0R6 528 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 PIF1Q9H611 641 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 ESRP2Q9H6T0 727 aaKnown RBP12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 CTPS2Q9NRF8 586 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 PARPBPQ9NWS1 579 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 TMEM181Q9P2C4 612 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 IFT52Q9Y366 437 aa12.91□□□□□ -0.34
NIF3L1-205ENST00000409588 POLR3GO15318 223 aaPredicted RBP12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 ADAP00813 363 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 THBS1P07996 1170 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 CHRM4P08173 479 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 PAX1P15863 534 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 PPIBP23284 216 aaKnown RBP12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 LOXP28300 417 aaPredicted RBP12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 MVDP53602 400 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 SLC16A1P53985 500 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 COPZ1P61923 177 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 H3F3AP84243 136 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 LIN52Q52LA3 116 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 P3H2Q8IVL5 708 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 ZNF100Q8IYN0 542 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 OR52P1PQ8NH57 321 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 SLC38A5Q8WUX1 472 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 STON2Q8WXE9 905 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 CNOT9Q92600 299 aaKnown RBP12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 ZBTB9Q96C00 473 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 MUCL1Q96DR8 90 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 OR52B2Q96RD2 323 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 TMEM204Q9BSN7 226 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 POTEKPQ9BYX7 375 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 VIPAS39Q9H9C1 493 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 BCL2L10Q9HD36 194 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 TCF7L2Q9NQB0 619 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 ING1Q9UK53 422 aaPredicted RBP12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 GMEB1Q9Y692 573 aa12.9□□□□□ -0.34
NIF3L1-205ENST00000409588 HEATR5AQ86XA9 2040 aa12.89□□□□□ -0.35
NIF3L1-205ENST00000409588 DSPPQ9NZW4 1301 aa12.89□□□□□ -0.35
NIF3L1-205ENST00000409588 A0A096LPI6 279 aa12.89□□□□□ -0.35
NIF3L1-205ENST00000409588 TMED7-TICAM2A0A0A6YYA0 188 aa12.89□□□□□ -0.35
NIF3L1-205ENST00000409588 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.89□□□□□ -0.35
NIF3L1-205ENST00000409588 CDHR4A6H8M9 788 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms