RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MITD1Q8WV92 249 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 GAB3Q8WWW8 586 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 DIO2Q92813 273 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 RBMXL1Q96E39 390 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 TCTN2Q96GX1 697 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ATOH8Q96SQ7 321 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SAMD10Q9BYL1 202 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 OR11A1Q9GZK7 315 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 MARCH4Q9P2E8 410 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 MBLAC1A4D2B0 266 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 TMEM221A6NGB7 291 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SURF4O15260 269 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 OIP5O43482 229 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CLIC3O95833 236 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 LCATP04180 440 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 RANP62826 216 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 TATDN3Q17R31 274 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 FAM74A1Q5RGS3 127 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ALKBH2Q6NS38 261 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 Q6ZNX1 250 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 PRSS35Q8N3Z0 413 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 BPIFB2Q8N4F0 458 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 GGHQ92820 318 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 KLK6Q92876 244 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 RSPRY1Q96DX4 576 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 GNPNAT1Q96EK6 184 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 RNF170Q96K19 258 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 STACQ99469 402 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SYT11Q9BT88 431 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 RBCK1Q9BYM8 510 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SLC25A32Q9H2D1 315 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 NALCNQ8IZF0 1738 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 KIR2DS1A0A191URI9 304 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 C11orf97A0A1B0GVM6 126 aaPredicted RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 A0A1W2PQ09 198 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 GABRPO00591 440 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 EIF4E2O60573 245 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 DDAH2O95865 285 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 MBP02144 154 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 T-ENOLP0DO92 83 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CCNOP22674 350 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CASP3P42574 277 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 KIR2DS4P43632 304 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 NRLP54845 237 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 MRPS21P82921 87 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF91Q05481 1191 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 MADCAM1Q13477 382 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 KIR2DS1Q14954 304 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 SSX2Q16385 188 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 HNRNPA1L2Q32P51 320 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF852Q6ZMS4 543 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 MDGA2Q7Z553 956 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CAMKMTQ7Z624 323 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CTU1Q7Z7A3 348 aaKnown RBP5.71□□□□□ -1.5
SCN1A-203ENST00000409050 LGI3Q8N145 548 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ZNF610Q8N9Z0 462 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 PLPP5Q8NEB5 264 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 OR52B6Q8NGF0 335 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 ASB11Q8WXH4 323 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 NXPE3Q969Y0 559 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 APIPQ96GX9 242 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 OCSTAMPQ9BR26 566 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 C1orf198Q9H425 327 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 CBLCQ9ULV8 474 aa5.71□□□□□ -1.5
SCN1A-203ENST00000409050 BOLA2-SMG1P6H3BVE0 249 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 MPPED1O15442 326 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SEMA4FO95754 770 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CSF3P09919 207 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 HIST1H1TP22492 207 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 AOAHP28039 575 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 EMP2P54851 167 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 MCCD1P59942 119 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 LCN6P62502 163 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SYT13Q7L8C5 426 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 PIWIL3Q7Z3Z3 882 aaKnown RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GRASPQ7Z6J2 395 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-203ENST00000409050 B3GNT8Q7Z7M8 397 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CD163Q86VB7 1156 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GCNT2Q8N0V5 402 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SEMA6DQ8NFY4 1073 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GTF2H4Q92759 462 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SLC41A2Q96JW4 573 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 SYT17Q9BSW7 474 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 BEX2Q9BXY8 128 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ALOXE3Q9BYJ1 711 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 ENKD1Q9H0I2 346 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 WDR76Q9H967 626 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 BEX1Q9HBH7 125 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 CLDND1Q9NY35 253 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 IER3IP1Q9Y5U9 82 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 DVL2O14641 736 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 F10P00742 488 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 S100A11P31949 105 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 AQP2P41181 271 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 MAP2K6P52564 334 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 UBE2KP61086 200 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 GPLD1P80108 840 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 NSDHLQ15738 373 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 BAK1Q16611 211 aa5.7□□□□□ -1.5
SCN1A-203ENST00000409050 LETMD1Q6P1Q0 360 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms