RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 POLDIP2Q9Y2S7 368 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TIMM10BQ9Y5J6 103 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 CLSPNQ9HAW4 1339 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 A0A1B0GUS0 222 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 K7N7A8 449 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 TNFSF11O14788 317 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 RGS16O15492 202 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CXCL13O43927 109 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 TBL1XO60907 577 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 HSMCR30P0CW71 290 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 GCFC2P16383 781 aaKnown RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 IMPDH1P20839 514 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 ZP3P21754 424 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 AQP1P29972 269 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 TDO2P48775 406 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 BIDP55957 195 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 HMGN5P82970 282 aaKnown RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 TNFRSF17Q02223 184 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CEP55Q53EZ4 464 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 DMRTC1Q5HYR2 192 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 PDZK1Q5T2W1 519 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 OR4F3Q6IEY1 312 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF530Q6P9A1 599 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 Q6ZPB1 254 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 DNM1P46Q6ZS02 220 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 LCA5Q86VQ0 697 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CCDC50Q8IVM0 306 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 NRMQ8IXM6 262 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CCDC65Q8IXS2 484 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 SLC35F2Q8IXU6 374 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CEND1Q8N111 149 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 OR8J1Q8NGP2 316 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 OR56B4Q8NH76 319 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 SHC3Q92529 594 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 NEIL2Q969S2 332 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 SLC41A3Q96GZ6 507 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 RBM14Q96PK6 669 aaKnown RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CCNL2Q96S94 520 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 TBX15Q96SF7 602 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 SLC35A5Q9BS91 424 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 NIPSNAP3BQ9BS92 247 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 SRXN1Q9BYN0 137 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF385DQ9H6B1 395 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 PTGES2Q9H7Z7 377 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 POLE4Q9NR33 117 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 PHF11Q9UIL8 331 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 CDH9Q9ULB4 789 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 LRRK1Q38SD2 2015 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 RAI1Q7Z5J4 1906 aaPredicted RBP1.48□□□□□ -2.17
VPS13A-206ENST00000376646 FRMPD3Q5JV73 1810 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 PNPLA6Q8IY17 1366 aa1.48□□□□□ -2.17
VPS13A-206ENST00000376646 POLR2DO15514 142 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 PFKFB2O60825 505 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SERF1AO75920 110 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SCGNO76038 276 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SLITRK3O94933 977 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 DIRAS1O95057 198 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 LALBAP00709 142 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 HSPB1P04792 205 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 RBMY1CP0DJD4 496 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 RNH1P13489 461 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 CCDC130P13994 396 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 NMT1P30419 496 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 NTSP30990 170 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 TAGLN2P37802 199 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 GRIA1P42261 906 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 RPS14P62263 151 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ZMYND11Q15326 602 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 CFAP221Q4G0U5 840 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 BEND3Q5T5X7 828 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 METTL11BQ5VVY1 283 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 NLRP9Q7RTR0 991 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 EFL1Q7Z2Z2 1120 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF589Q86UQ0 364 aaPredicted RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 C17orf82Q86X59 251 aaPredicted RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 OR2L13Q8N349 312 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SVOPLQ8N434 492 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 MFSD9Q8NBP5 474 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 BHLHE23Q8NDY6 225 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF564Q8TBZ8 553 aaPredicted RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SCFD1Q8WVM8 642 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 FGGYQ96C11 551 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 COQ2Q96H96 371 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 RPRD1AQ96P16 312 aaPredicted RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SLC38A2Q96QD8 506 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF184Q99676 751 aaPredicted RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 GAL3ST1Q99999 423 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 NMUR2Q9GZQ4 415 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SMYD3Q9H7B4 428 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 VCPKMTQ9H867 229 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ONECUT1Q9UBC0 465 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 PRPF19Q9UMS4 504 aaKnown RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ASB3Q9Y575 518 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 CHD4Q14839 1912 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 MUC5ACP98088 5654 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 RPAP1Q9BWH6 1393 aaPredicted RBP1.47□□□□□ -2.17
VPS13A-206ENST00000376646 IGHV1OR15-1A0A075B7D0 117 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 SYNJ2BP-COX16A0A087WUM0 186 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 ZFP92A6NM28 416 aa1.47□□□□□ -2.17
VPS13A-206ENST00000376646 TRDCB7Z8K6 153 aa1.47□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms