RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 ZNF300Q96RE9 604 aaPredicted RBP16.34■□□□□ 0.21
CLN3-202ENST00000355477 CXXC4Q9H2H0 198 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 BCO1Q9HAY6 547 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 CHST2Q9Y4C5 530 aa16.34■□□□□ 0.21
CLN3-202ENST00000355477 CDHR4A6H8M9 788 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 CFAP73A6NFT4 308 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 NR5A2O00482 541 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 GCM2O75603 506 aaPredicted RBP16.33■□□□□ 0.2
CLN3-202ENST00000355477 RAF1P04049 648 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 FESP07332 822 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 GKN3PP0CG01 181 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 LOXP28300 417 aaPredicted RBP16.33■□□□□ 0.2
CLN3-202ENST00000355477 CRISP3P54108 245 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 EPS8Q12929 822 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 GNA13Q14344 377 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 TSC22D1Q15714 1073 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 PAGE3Q5JUK9 113 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 CXorf67Q86X51 503 aaPredicted RBP16.33■□□□□ 0.2
CLN3-202ENST00000355477 GABRG1Q8N1C3 465 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 CLIP4Q8N3C7 705 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 MAL2Q969L2 176 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 SPDL1Q96EA4 605 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 HS3ST6Q96QI5 342 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 CALML5Q9NZT1 146 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 KLHL9Q9P2J3 617 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 OSGIN1Q9UJX0 560 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 EDARQ9UNE0 448 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 CADP27708 2225 aa16.33■□□□□ 0.2
CLN3-202ENST00000355477 TMED7-TICAM2A0A0A6YYA0 188 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 A0A0G2JPF8 293 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 TMEM72A0PK05 275 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 HNRNPCL2B2RXH8 293 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 ZNF814B7Z6K7 855 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 HNRNPCL3B7ZW38 293 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 FAAHO00519 579 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 KLF4O43474 513 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 HNRNPCL1O60812 293 aaKnown RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 HNRNPCL4P0DMR1 293 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 EDNRAP25101 427 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 TACR3P29371 465 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 ACAA2P42765 397 aaKnown RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 SLC1A3P43003 542 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 HTR3AP46098 478 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 CSNK2A1P68400 391 aaPredicted RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 AGKQ53H12 422 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 LRIF1Q5T3J3 769 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 MTDHQ86UE4 582 aaKnown RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 C10orf111Q8N326 155 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 MBD6Q96DN6 1003 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 ACTR6Q9GZN1 396 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 THUMPD1Q9NXG2 353 aaKnown RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 ZNF443Q9Y2A4 671 aaPredicted RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 GPR52Q9Y2T5 361 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 TMED7Q9Y3B3 224 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 HDGFL3Q9Y3E1 203 aa16.32■□□□□ 0.2
CLN3-202ENST00000355477 SPIN1Q9Y657 262 aaPredicted RBP16.32■□□□□ 0.2
CLN3-202ENST00000355477 PMS2P2O95744 297 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 BMP2P12643 396 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 PPP3CBP16298 524 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 PSMB1P20618 241 aaKnown RBP16.31■□□□□ 0.2
CLN3-202ENST00000355477 CLK1P49759 484 aaKnown RBP16.31■□□□□ 0.2
CLN3-202ENST00000355477 ATP4BP51164 291 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 POLR2HP52434 150 aaKnown RBP16.31■□□□□ 0.2
CLN3-202ENST00000355477 KEAP1Q14145 624 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 LIN52Q52LA3 116 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 ZC3HAV1Q7Z2W4 902 aaKnown RBP16.31■□□□□ 0.2
CLN3-202ENST00000355477 TACO1Q9BSH4 297 aaKnown RBP16.31■□□□□ 0.2
CLN3-202ENST00000355477 RSPO3Q9BXY4 272 aaPredicted RBP16.31■□□□□ 0.2
CLN3-202ENST00000355477 ADAM19Q9H013 955 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 A4GALTQ9NPC4 353 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 FANCFQ9NPI8 374 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 VAPAQ9P0L0 249 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 PRSS50Q9UI38 385 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 DCTN4Q9UJW0 460 aa16.31■□□□□ 0.2
CLN3-202ENST00000355477 TRBV5-3A0A0A0MS03 114 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 ZC3H12DA2A288 527 aaKnown RBP16.3■□□□□ 0.2
CLN3-202ENST00000355477 ZNF724A8MTY0 619 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 RAMP1O60894 148 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 ADAP00813 363 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 PRG2P13727 222 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 CD53P19397 219 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 FKBP2P26885 142 aaKnown RBP16.3■□□□□ 0.2
CLN3-202ENST00000355477 NTF4P34130 210 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 OR3A2P47893 321 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 FADDQ13158 208 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 SQLEQ14534 574 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 SFRP5Q5T4F7 317 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 RNF220Q5VTB9 566 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 ABLIM2Q6H8Q1 611 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 CCDC103Q8IW40 242 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 ZNF440Q8IYI8 595 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 S100PBPQ96BU1 408 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 ALPK1Q96QP1 1244 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 RAD21L1Q9H4I0 556 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 IKZF5Q9H5V7 419 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 BCL2L10Q9HD36 194 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 NPHS2Q9NP85 383 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 ZNF232Q9UNY5 417 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 TRAPPC4Q9Y296 219 aa16.3■□□□□ 0.2
CLN3-202ENST00000355477 TMEM247A6NEH6 219 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms