RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 G6PC3Q9BUM1 346 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 TP63Q9H3D4 680 aaPredicted RBP20.03■□□□□ 0.8
SHMT1-202ENST00000352886 WSB2Q9NYS7 404 aaPredicted RBP20.03■□□□□ 0.8
SHMT1-202ENST00000352886 EXTL2Q9UBQ6 330 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 CLDN16Q9Y5I7 305 aa20.03■□□□□ 0.8
SHMT1-202ENST00000352886 LRRN3E7EW58 273 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 CLDN4O14493 209 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 HIST1H1CP16403 213 aaKnown RBP20.02■□□□□ 0.8
SHMT1-202ENST00000352886 PYCR1P32322 319 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 GPR3P46089 330 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 ACTC1P68032 377 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 ACTA1P68133 377 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 IGLV3-21P80748 117 aaPredicted RBP20.02■□□□□ 0.8
SHMT1-202ENST00000352886 ZFP69Q49AA0 526 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 PLET1Q6UQ28 207 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 IL20RBQ6UXL0 311 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 GLCCI1Q86VQ1 547 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 FAM160A2Q8N612 972 aaPredicted RBP20.02■□□□□ 0.8
SHMT1-202ENST00000352886 METTL27Q8N6F8 245 aaPredicted RBP20.02■□□□□ 0.8
SHMT1-202ENST00000352886 LRRC17Q8N6Y2 441 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 OR5J2Q8NH18 312 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 C16orf52Q8NHV5 167 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 ABHD4Q8TB40 342 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 SLC2A12Q8TD20 617 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 RLN3Q8WXF3 142 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 PGLYRP3Q96LB9 341 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 DMRTB1Q96MA1 342 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 LRRN3Q9H3W5 708 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 RBFOX1Q9NWB1 397 aaKnown RBP20.02■□□□□ 0.8
SHMT1-202ENST00000352886 CHRNA9Q9UGM1 479 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 SERTAD3Q9UJW9 196 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 OR10H1Q9Y4A9 318 aa20.02■□□□□ 0.8
SHMT1-202ENST00000352886 IDH3BO43837 385 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 TRAPPC2P0DI81 140 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 TRAPPC2BP0DI82 140 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 ATXN8OSP0DMR3 200 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 PSKH1P11801 424 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 RCVRNP35243 200 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 HCCSP53701 268 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 OR10A3P58181 314 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 POU4F2Q12837 409 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 TRAM1Q15629 374 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 ARL14Q8N4G2 192 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 OR4C3Q8NH37 302 aa20.02■□□□□ 0.79
SHMT1-202ENST00000352886 ZMYND19Q96E35 227 aaPredicted RBP20.02■□□□□ 0.79
SHMT1-202ENST00000352886 MKKSQ9NPJ1 570 aaPredicted RBP20.02■□□□□ 0.79
SHMT1-202ENST00000352886 MCIDASD6RGH6 385 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 NDUFB2O95178 105 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 CSTAP01040 98 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 PRKAR1AP10644 381 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 MZT2BQ6NZ67 158 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 SLC43A2Q8N370 569 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 BCORP1Q8N888 145 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 OR51L1Q8NGJ5 315 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 UBASH3BQ8TF42 649 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 TCTN2Q96GX1 697 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 ORAI3Q9BRQ5 295 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 C2orf42Q9NWW7 574 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 NUFIP1Q9UHK0 495 aaKnown RBP20.01■□□□□ 0.79
SHMT1-202ENST00000352886 IER3IP1Q9Y5U9 82 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 A0A0G2JMP0 313 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 A0A0X1KG70 313 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 LYRM1O43325 122 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 INPP1P49441 399 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 OR4M2Q8NGB6 313 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 SLC7A6Q92536 515 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 SGTBQ96EQ0 304 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 MMABQ96EY8 250 aaPredicted RBP20.01■□□□□ 0.79
SHMT1-202ENST00000352886 OR2B2Q9GZK3 357 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 OR10A5Q9H207 317 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 SYNDIG1Q9H7V2 258 aa20.01■□□□□ 0.79
SHMT1-202ENST00000352886 NSA2O95478 260 aaKnown RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 CAPZBP47756 277 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 PPM1FP49593 454 aaPredicted RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 GPR143P51810 404 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 DMKNQ6E0U4 476 aaPredicted RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 THOC7Q6I9Y2 204 aaKnown RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 SFXN4Q6P4A7 337 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 NANOGNBQ7Z5D8 188 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 ZC3HAV1LQ96H79 300 aaKnown RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 KCNJ15Q99712 375 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 KLHL1Q9NR64 748 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 RASD1Q9Y272 281 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 ADAM18Q9Y3Q7 739 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 MAGEB4O15481 346 aaPredicted RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 SC5DO75845 299 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 TFP02787 698 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 IFNA16P05015 189 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 THBS2P35442 1172 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 TP53I3Q53FA7 332 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 CHCHD2P9Q5T1J5 151 aaPredicted RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 LRRC28Q86X40 367 aaPredicted RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 SLC7A5P1Q8MH63 180 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 OR6C4Q8NGE1 309 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 OR13C5Q8NGS8 318 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 UBL7Q96S82 380 aaPredicted RBP20■□□□□ 0.79
SHMT1-202ENST00000352886 ENAMQ9NRM1 1142 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 CLCA3PQ9Y6N3 262 aa20■□□□□ 0.79
SHMT1-202ENST00000352886 MPDZO75970 2070 aa19.99■□□□□ 0.79
SHMT1-202ENST00000352886 A0A087WUJ7 227 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms