RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 HMGA2P52926 109 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 FXNQ16595 210 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 VWA2Q5GFL6 755 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 ENTPD8Q5MY95 495 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 UBQLNLQ8IYU4 475 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 OR9Q2Q8NGE9 314 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 GPR148Q8TDV2 347 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 GPR87Q9BY21 358 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 DPH1Q9BZG8 443 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PAK1IP1Q9NWT1 392 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 CHRNA9Q9UGM1 479 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 MBD1Q9UIS9 605 aaPredicted RBP6.35□□□□□ -1.39
SF3B1-201ENST00000335508 FKBP7Q9Y680 259 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 A3GALT2U3KPV4 340 aa6.35□□□□□ -1.39
SF3B1-201ENST00000335508 PRAMEF4O60810 478 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 STSP08842 583 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 TGFBR2P37173 567 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 CSNK1A1P48729 337 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 NKG7Q16617 165 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 MOGQ16653 247 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM176BQ3YBM2 270 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 PRAMEF9Q5VWM5 478 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 C3orf33Q6P1S2 294 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 RCBTB1Q8NDN9 531 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 NEIL3Q8TAT5 605 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF417Q8TAU3 575 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 NEK7Q8TDX7 302 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 PIGQQ9BRB3 760 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ORAI3Q9BRQ5 295 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 LAT2Q9GZY6 243 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 KLHL31Q9H511 634 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 SEMA4GQ9NTN9 838 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 SLC7A7Q9UM01 511 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 NOP16Q9Y3C1 178 aaKnown RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 KLK4Q9Y5K2 254 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 IER3IP1Q9Y5U9 82 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 WIF1Q9Y5W5 379 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 RLFQ13129 1914 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 C21orf140B9A014 251 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 SPINT1O43278 529 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 CLPXO76031 633 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 UTS2O95399 124 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 CHMP24386 653 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 NUP62P37198 522 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 BCAP31P51572 246 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 UBE2NP61088 152 aaKnown RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 NHSL2Q5HYW2 709 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF793Q6ZN11 406 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 LHFPL3Q86UP9 236 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 OR1N1Q8NGS0 311 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF587Q96SQ5 575 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 POTEKPQ9BYX7 375 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ULBP2Q9BZM5 246 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 CST11Q9H112 138 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM184BQ9Y519 407 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ARHGEF17Q96PE2 2063 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 HMGN4O00479 90 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 P2RX1P51575 399 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 POU3F1Q03052 451 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 LTB4RQ15722 352 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 MAPK11Q15759 364 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 GAB4Q2WGN9 574 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF385BQ569K4 471 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM17Q86X19 198 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 PLCZ1Q86YW0 608 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 DNAJC22Q8N4W6 341 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 CHDHQ8NE62 594 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 OR52E2Q8NGJ4 325 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 DOK4Q8TEW6 326 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 MRGPRX4Q96LA9 322 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 INTS14Q96SY0 518 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 IKZF5Q9H5V7 419 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 WDR54Q9H977 334 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 C2orf42Q9NWW7 574 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 HDGFL3Q9Y3E1 203 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 RBM7Q9Y580 266 aaKnown RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ALG1L2C9J202 215 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 H3BML4 177 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 J3QLW9 94 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 SOCS2O14508 198 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 MITFO75030 526 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF19P17023 458 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 PITPNAQ00169 270 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 MELKQ14680 651 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 GRAMD2AQ8IUY3 354 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 MSRB3Q8IXL7 192 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 ASB17Q8WXJ9 295 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 KCTD12Q96CX2 325 aaKnown RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 BABAM2Q9NXR7 383 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 GPR55Q9Y2T6 319 aaPredicted RBP6.34□□□□□ -1.39
SF3B1-201ENST00000335508 PKD1L2Q7Z442 2459 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 TRIP11Q15643 1979 aa6.34□□□□□ -1.39
SF3B1-201ENST00000335508 OR6C70A6NIJ9 312 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 GATBO75879 557 aaKnown RBP6.34□□□□□ -1.4
SF3B1-201ENST00000335508 DDAH2O95865 285 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 OR2T7P0C7T2 308 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 MSL3P1P0C860 447 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 ARFRP1Q13795 201 aa6.34□□□□□ -1.4
SF3B1-201ENST00000335508 HSD17B12Q53GQ0 312 aa6.34□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms