RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CGREF1Q99674 301 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 OPN3Q9H1Y3 402 aaPredicted RBP14.14□□□□□ -0.15
CLN3-201ENST00000333496 YY1AP1Q9H869 796 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 CRIM1Q9NZV1 1036 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 AKAP9Q99996 3911 aa14.14□□□□□ -0.15
CLN3-201ENST00000333496 ANKHD1Q8IWZ3 2542 aaKnown RBP14.13□□□□□ -0.15
CLN3-201ENST00000333496 EVPLLA8MZ36 301 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 FAAHO00519 579 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 SS18L1O75177 396 aaPredicted RBP14.13□□□□□ -0.15
CLN3-201ENST00000333496 KLK2P20151 261 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 ENPP1P22413 925 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 SLC7A1P30825 629 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 KIR2DL3P43628 341 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 CPA2P48052 419 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 RAC3P60763 192 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 MYBPHQ13203 477 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 LARS2Q15031 903 aaKnown RBP14.13□□□□□ -0.15
CLN3-201ENST00000333496 SYT14P1Q58G82 188 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 BBS10Q8TAM1 723 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 ABHD3Q8WU67 409 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 OR5B2Q96R09 309 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 SPATA9Q9BWV2 254 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 TMEM38AQ9H6F2 299 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 MCCC2Q9HCC0 563 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 TIGARQ9NQ88 270 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 SERINC1Q9NRX5 453 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 CHRNA9Q9UGM1 479 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 CORO2BQ9UQ03 480 aa14.13□□□□□ -0.15
CLN3-201ENST00000333496 HRNRQ86YZ3 2850 aaPredicted RBP14.12□□□□□ -0.15
CLN3-201ENST00000333496 IGHV3-15A0A0B4J1V0 119 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 CD8BP10966 210 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 PRG2P13727 222 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ETS2P15036 469 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 PEX19P40855 299 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 MTPNP58546 118 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 CDK6Q00534 326 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 SORDQ00796 357 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 NFYCQ13952 458 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ZNF311Q5JNZ3 666 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 FAM91A1Q658Y4 838 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 REEP3Q6NUK4 255 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 KIF18BQ86Y91 864 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 PTOV1Q86YD1 416 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ZZZ3Q8IYH5 903 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ZNF610Q8N9Z0 462 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 LINC01560Q8TB33 94 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ARL5BQ96KC2 179 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ZNF559Q9BR84 538 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ADAM19Q9H013 955 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 SLC24A3Q9HC58 644 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 OSGIN1Q9UJX0 560 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ZNF232Q9UNY5 417 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 IFT52Q9Y366 437 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 C5orf58C9J3I9 102 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 PLGP00747 810 aaPredicted RBP14.12□□□□□ -0.15
CLN3-201ENST00000333496 TACR3P29371 465 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 SLC1A3P43003 542 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 DIO1P49895 249 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 FAM27E3Q08E93 113 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 TMPPEQ6ZT21 453 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 FCRLAQ7L513 359 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 SERPINA11Q86U17 422 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 COMTD1Q86VU5 262 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ZNF440Q8IYI8 595 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 OR6K3Q8NGY3 331 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 SLC25A43Q8WUT9 341 aaPredicted RBP14.12□□□□□ -0.15
CLN3-201ENST00000333496 DNAJA3Q96EY1 480 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 LURAP1Q96LR2 239 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 OR11A1Q9GZK7 315 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 PLSCR4Q9NRQ2 329 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 GLRX2Q9NS18 164 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ARMCX1Q9P291 453 aa14.12□□□□□ -0.15
CLN3-201ENST00000333496 ING1Q9UK53 422 aaPredicted RBP14.12□□□□□ -0.15
CLN3-201ENST00000333496 TMED7-TICAM2A0A0A6YYA0 188 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 TMEM72A0PK05 275 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 TUBAL3A6NHL2 446 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 SMAD9O15198 467 aaKnown RBP14.11□□□□□ -0.15
CLN3-201ENST00000333496 FRS3O43559 492 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 AGTR1P30556 359 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 CPOXP36551 454 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 HTR3AP46098 478 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 SCARB2Q14108 478 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 CAPRIN1Q14444 709 aaKnown RBP14.11□□□□□ -0.15
CLN3-201ENST00000333496 GTF2IRD2BQ6EKJ0 949 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 GTF2IRD2Q86UP8 949 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 REXO5Q96IC2 774 aaKnown RBP14.11□□□□□ -0.15
CLN3-201ENST00000333496 SLC39A3Q9BRY0 314 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 KAT8Q9H7Z6 458 aaKnown RBP14.11□□□□□ -0.15
CLN3-201ENST00000333496 MRGBPQ9NV56 204 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 PROCRQ9UNN8 238 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 TMED7Q9Y3B3 224 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 EMC9Q9Y3B6 208 aa14.11□□□□□ -0.15
CLN3-201ENST00000333496 FAM221AA4D161 298 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 FXYD1O00168 92 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 SULT2B1O00204 365 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 TPST1O60507 370 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 CCNA2P20248 432 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 SLC6A2P23975 617 aa14.1□□□□□ -0.15
CLN3-201ENST00000333496 POLR2HP52434 150 aaKnown RBP14.1□□□□□ -0.15
CLN3-201ENST00000333496 CTBP2P56545 445 aa14.1□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms