RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 B3GALT6Q96L58 329 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PSKH2Q96QS6 385 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 DUSP16Q9BY84 665 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TMEM9Q9P0T7 183 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 SPRR3Q9UBC9 169 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 ANAPC7Q9UJX3 599 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 MRPS7Q9Y2R9 242 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 LAMC1P11047 1609 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 TECPR2O15040 1411 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 RRBP1Q9P2E9 1410 aaKnown RBP2.42□□□□□ -2.02
HMGB1-201ENST00000326004 FANCIQ9NVI1 1328 aa2.42□□□□□ -2.02
HMGB1-201ENST00000326004 PXDNQ92626 1479 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 C15orf38-AP3S2A0A0A6YYH1 394 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 ESYT2A0FGR8 921 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 GSAPA4D1B5 854 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 TMEM110-MUSTN1A8MSY1 372 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 K7ENP7 123 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 K7EQM0 130 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 CTAGE5O15320 804 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 STX7O15400 261 aaKnown RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 RHOBTB1O94844 696 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 CCDC166P0CW27 439 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 DNAH10OSP0CZ25 163 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 SFTPCP11686 197 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 RPA2P15927 270 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 DLSTP36957 453 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 RPL29P47914 159 aaKnown RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 MRPS11P82912 194 aaKnown RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 BEX3Q00994 111 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 CNTN2Q02246 1040 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 CSTF1Q05048 431 aaKnown RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 RIPPLY1Q0D2K3 151 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 NDUFA9Q16795 377 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 C9orf129Q5T035 196 aaKnown RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 ZYG11AQ6WRX3 759 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 FRA10AC1Q70Z53 315 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 NANPQ8TBE9 248 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 ARNTL2Q8WYA1 636 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 MYLPFQ96A32 169 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 FGGYQ96C11 551 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 MAGEB18Q96M61 343 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 OR5B2Q96R09 309 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 ZNF607Q96SK3 696 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 VCX2Q9H322 139 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 Q9H3A6 140 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 EHD1Q9H4M9 534 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 LRRC40Q9H9A6 602 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 CAB39LQ9H9S4 337 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 CALHM2Q9HA72 323 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 TM9SF3Q9HD45 589 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 PPIAL4AQ9Y536 164 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 DDX49Q9Y6V7 483 aaKnown RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 NRAPQ86VF7 1730 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 LMTK2Q8IWU2 1503 aa2.41□□□□□ -2.02
HMGB1-201ENST00000326004 TROQ12816 1431 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 SF3B1O75533 1304 aaKnown RBP eCLIP2.41□□□□□ -2.02
HMGB1-201ENST00000326004 VIRMAQ69YN4 1812 aaKnown RBP2.4□□□□□ -2.02
HMGB1-201ENST00000326004 NALCNQ8IZF0 1738 aa2.4□□□□□ -2.02
HMGB1-201ENST00000326004 IGKV6D-41A0A0C4DH26 115 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 ZFP92A6NM28 416 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 HDAC3O15379 428 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 TBL1XO60907 577 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 LYPLA1O75608 230 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 SURF6O75683 361 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 GPX5O75715 221 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 KIAA0754O94854 1291 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 MBD3O95983 291 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 IGHV3-23P01764 117 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 HSPB1P04792 205 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 IGF1P05019 195 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 UGT2B4P06133 528 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 PSMB1P20618 241 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 SERPINA2P20848 420 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 TBXA2RP21731 343 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 ZBTB25P24278 435 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 ADORA2BP29275 332 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 NMT1P30419 496 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 GDI1P31150 447 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 MAGEA5P43359 124 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 NUCB2P80303 420 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 OTUD4Q01804 1114 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 BCL2L1Q07817 233 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 MAPK6Q16659 721 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 FAHD2BQ6P2I3 314 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 SYT10Q6XYQ8 523 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 APTXQ7Z2E3 356 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 DPY19L4Q7Z388 723 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 C17orf82Q86X59 251 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CDH26Q8IXH8 852 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 DEFB123Q8N688 67 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 C14orf178Q8N769 122 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 OR2T33Q8NG76 320 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 OR56B2PQ8NGI1 322 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 OR13C2Q8NGS9 318 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CNIH3Q8TBE1 160 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 M1APQ8TC57 530 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 AENQ8WTP8 325 aaKnown RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 CTNNBL1Q8WYA6 563 aaPredicted RBP2.4□□□□□ -2.03
HMGB1-201ENST00000326004 OSTF1Q92882 214 aa2.4□□□□□ -2.03
HMGB1-201ENST00000326004 SLC25A38Q96DW6 304 aa2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms