RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PIGMQ9H3S5 423 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 CWH43Q9H720 699 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 METTL7AQ9H8H3 244 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ATP13A2Q9NQ11 1180 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 C1GALT1Q9NS00 363 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 GPR34Q9UPC5 381 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 GASTP01350 101 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 RAF1P04049 648 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ZNF41P51814 821 aaPredicted RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 UBE2KP61086 200 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SSTP61278 116 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 LTBQ06643 244 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SIGIRRQ6IA17 410 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SFXN4Q6P4A7 337 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 VASH1Q7L8A9 365 aaPredicted RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 OR4N5Q8IXE1 308 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ANGPTL6Q8NI99 470 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 PHOSPHO2Q8TCD6 241 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 FGF13Q92913 245 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 HHIPL1Q96JK4 782 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SMIM3Q9BZL3 60 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 AKIP1Q9NQ31 210 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 DMRT3Q9NQL9 472 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 FBXO24O75426 580 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SIX6O95475 246 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 KLKB1P03952 638 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ADRB1P08588 477 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 CLEC2LP0C7M8 214 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SLC2A5P22732 501 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 RPS19P39019 145 aaKnown RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 MAGEB1P43366 347 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ZNF704Q6ZNC4 412 aaPredicted RBP10.76□□□□□ -0.69
VPS39-201ENST00000318006 OR4M1Q8NGD0 313 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 EGLN2Q96KS0 407 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 SFXN2Q96NB2 322 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 TGM7Q96PF1 710 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 OR52D1Q9H346 318 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 ZNF442Q9H7R0 627 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 KCNS2Q9ULS6 477 aa10.76□□□□□ -0.69
VPS39-201ENST00000318006 TTLL8A6PVC2 850 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 J3KTA2 159 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 NAT1P18440 290 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HNRNPA2B1P22626 353 aaKnown RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 SGCBQ16585 318 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HENMT1Q5T8I9 393 aaKnown RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 KDM4DQ6B0I6 523 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 FAM180BQ6P0A1 224 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HAS2Q92819 552 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 RRNAD1Q96FB5 475 aaKnown RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 ZIC5Q96T25 663 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 PLCXD1Q9NUJ7 323 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ALKBH4Q9NXW9 302 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 C5AR2Q9P296 337 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ICKQ9UPZ9 632 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 CAMK2AQ9UQM7 478 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ADAM18Q9Y3Q7 739 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 TRDV1A0A1B0GX56 115 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HSBP1L1C9JCN9 74 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HOXC11O43248 304 aaPredicted RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 FRS3O43559 492 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 MPIG6BO95866 241 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 IL1RNP18510 177 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 CASRP41180 1078 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 AKR1C2P52895 323 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 P2RX3P56373 397 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SELENBP1Q13228 472 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ILKQ13418 452 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 GPR50Q13585 617 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HIST2H3PS2Q5TEC6 136 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 GRAMD2AQ8IUY3 354 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 TOMM40LQ969M1 308 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 TMEM121BQ9BXQ6 578 aaPredicted RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 MYEF2Q9P2K5 600 aaKnown RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 HS3ST2Q9Y278 367 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 B3GALT1Q9Y5Z6 326 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 KIAA1551Q9HCM1 1747 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 IGLV3-10A0A075B6K4 115 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SLC22A23A1A5C7 686 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 FAM183AA6NL82 134 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 EFCAB7A8K855 629 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 CTHP32929 405 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 GZMKP49863 264 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ZNF136P52737 540 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 NNATQ16517 81 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 TMEM225Q6GV28 225 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ZNF425Q6IV72 752 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 RPL22L1Q6P5R6 122 aaKnown RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 MEX3DQ86XN8 651 aaKnown RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 ANKRD53Q8N9V6 530 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 ZBTB44Q8NCP5 570 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SLAMF9Q96A28 289 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 TGIF2Q9GZN2 237 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 FAM212BQ9NTI7 297 aaPredicted RBP10.75□□□□□ -0.69
VPS39-201ENST00000318006 MED17Q9NVC6 651 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 FAM86C1Q9NVL1 165 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SAGE1Q9NXZ1 904 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 IER3IP1Q9Y5U9 82 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 HCFC2Q9Y5Z7 792 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 A0A0B4J2A0 478 aa10.75□□□□□ -0.69
VPS39-201ENST00000318006 SYT7O43581 403 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms