RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 NGBQ9NPG2 151 aa17.3■□□□□ 0.36
LIME1-201ENST00000309546 EMC3Q9P0I2 261 aa17.3■□□□□ 0.36
LIME1-201ENST00000309546 RNF115Q9Y4L5 304 aa17.3■□□□□ 0.36
LIME1-201ENST00000309546 NF1P21359 2839 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 AGAP5A6NIR3 686 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 ZNF724A8MTY0 619 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 H7C1Q1 480 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 SLC22A3O75751 556 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 ANP32DO95626 131 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 CD3EP07766 207 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 IL7RP16871 459 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 HOXB4P17483 251 aaPredicted RBP17.29■□□□□ 0.36
LIME1-201ENST00000309546 TXNL4AP83876 142 aaKnown RBP17.29■□□□□ 0.36
LIME1-201ENST00000309546 GNA13Q14344 377 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 CLEC9AQ6UXN8 241 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 LRRC74BQ6ZQY2 392 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 MAVSQ7Z434 540 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 ATG4DQ86TL0 474 aaPredicted RBP17.29■□□□□ 0.36
LIME1-201ENST00000309546 HSD17B8Q92506 261 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 ZNF75CPQ92670 426 aaPredicted RBP17.29■□□□□ 0.36
LIME1-201ENST00000309546 TLCD1Q96CP7 247 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 CXorf56Q9H5V9 222 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 ESRP2Q9H6T0 727 aaKnown RBP17.29■□□□□ 0.36
LIME1-201ENST00000309546 TMBIM4Q9HC24 238 aa17.29■□□□□ 0.36
LIME1-201ENST00000309546 TMED7-TICAM2A0A0A6YYA0 188 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 SMAD7O15105 426 aaKnown RBP17.28■□□□□ 0.36
LIME1-201ENST00000309546 PMS2P2O95744 297 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 IGHV3-9P01782 118 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 IL6P05231 212 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 HTR3AP46098 478 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 SLC18A1P54219 525 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 OR2B6P58173 313 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 MRPL2Q5T653 305 aaKnown RBP17.28■□□□□ 0.36
LIME1-201ENST00000309546 PRSS57Q6UWY2 283 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 MTDHQ86UE4 582 aaKnown RBP17.28■□□□□ 0.36
LIME1-201ENST00000309546 ADGRG3Q86Y34 549 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 CMIPQ8IY22 773 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 UBE2J2Q8N2K1 259 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 ZNF611Q8N823 705 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 MAELQ96JY0 434 aaKnown RBP17.28■□□□□ 0.36
LIME1-201ENST00000309546 GSX2Q9BZM3 304 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 SLC6A13Q9NSD5 602 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 NOSIPQ9Y314 301 aaKnown RBP17.28■□□□□ 0.36
LIME1-201ENST00000309546 TMED7Q9Y3B3 224 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 HDGFL3Q9Y3E1 203 aa17.28■□□□□ 0.36
LIME1-201ENST00000309546 TMEM72A0PK05 275 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 TRIM64A6NGJ6 449 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 TRIM64BA6NI03 449 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 UBDO15205 165 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 DBIP07108 87 aaKnown RBP17.27■□□□□ 0.36
LIME1-201ENST00000309546 UQCRBP14927 111 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 RPS4Y1P22090 263 aaKnown RBP17.27■□□□□ 0.36
LIME1-201ENST00000309546 IGHV1-2P23083 117 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 CRATP43155 626 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 POLR2HP52434 150 aaKnown RBP17.27■□□□□ 0.36
LIME1-201ENST00000309546 LTBQ06643 244 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 GSTA3Q16772 222 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 C6orf10Q5SRN2 563 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 NCMAPQ5T1S8 102 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 AP1ARQ63HQ0 302 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 PEX5LQ8IYB4 626 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 CIARTQ8N365 385 aaPredicted RBP17.27■□□□□ 0.36
LIME1-201ENST00000309546 OR9I1Q8NGQ6 314 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 PIGXQ8TBF5 258 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 PIWIL2Q8TC59 973 aaKnown RBP17.27■□□□□ 0.36
LIME1-201ENST00000309546 OR52B2Q96RD2 323 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 RMND5AQ9H871 391 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 MTHFD2LQ9H903 347 aaPredicted RBP17.27■□□□□ 0.36
LIME1-201ENST00000309546 ZIM2Q9NZV7 527 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 P2RX2Q9UBL9 471 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 LAMP3Q9UQV4 416 aa17.27■□□□□ 0.36
LIME1-201ENST00000309546 CFAP73A6NFT4 308 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 ZNF716A6NP11 495 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 BCHEP06276 602 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 ETFAP13804 333 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 GGT1P19440 569 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 TACR3P29371 465 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 BSPH1Q075Z2 132 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 PPA1Q15181 289 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 GTDC1Q4AE62 458 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 BEND6Q5SZJ8 279 aaPredicted RBP17.26■□□□□ 0.35
LIME1-201ENST00000309546 CCDC103Q8IW40 242 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 KBTBD8Q8NFY9 601 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 IGFBPL1Q8WX77 278 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 NEUROG1Q92886 237 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 FBXW5Q969U6 566 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 APH1AQ96BI3 265 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 DDIT4LQ96D03 193 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 COX4I2Q96KJ9 171 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 USB1Q9BQ65 265 aaKnown RBP17.26■□□□□ 0.35
LIME1-201ENST00000309546 BDH2Q9BUT1 245 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 SDR39U1Q9NRG7 319 aaPredicted RBP17.26■□□□□ 0.35
LIME1-201ENST00000309546 RLIMQ9NVW2 624 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 TMEM181Q9P2C4 612 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 OSGIN1Q9UJX0 560 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 USF3Q68DE3 2245 aa17.26■□□□□ 0.35
LIME1-201ENST00000309546 IGKV3D-15A0A087WSY6 115 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 RAMP1O60894 148 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 RAD51DO75771 328 aa17.25■□□□□ 0.35
LIME1-201ENST00000309546 COX5AP20674 150 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms