RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SYNPO2LQ9H987 977 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TAS2R10Q9NYW0 307 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 ICKQ9UPZ9 632 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 F5H5P2 479 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 OR2T1O43869 369 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 PRAF2O60831 178 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 SC5DO75845 299 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 C1orf105O95561 183 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 HMGN1P05114 100 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 SYN1P17600 705 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 NAA10P41227 235 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 ZC3H14Q6PJT7 736 aaKnown RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 NXPE4Q6UWF7 544 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 DNAJB7Q7Z6W7 309 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 SERINC5Q86VE9 423 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 OR6V1Q8N148 313 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 EIF4E3Q8N5X7 224 aaKnown RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 ARL14EPQ8N8R7 260 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 DNAAF1Q8NEP3 725 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 OR5T2Q8NGG2 359 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 TNFAIP8L1Q8WVP5 186 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 DVL3Q92997 716 aaPredicted RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 ZNF559Q9BR84 538 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 NIT2Q9NQR4 276 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 MRPL17Q9NRX2 175 aaKnown RBP12.47□□□□□ -0.41
SKA3-201ENST00000298260 KLHL42Q9P2K6 505 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 SLC7A7Q9UM01 511 aa12.47□□□□□ -0.41
SKA3-201ENST00000298260 RAB19A4D1S5 217 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 FOXE1O00358 373 aaPredicted RBP12.46□□□□□ -0.41
SKA3-201ENST00000298260 SLC25A12O75746 678 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 NDUFV2P19404 249 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 ITGB8P26012 769 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 MPIP34949 423 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 NPBWR1P48145 328 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 P2RX1P51575 399 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 PCBP4P57723 403 aaKnown RBP12.46□□□□□ -0.41
SKA3-201ENST00000298260 Q6ZVU0 165 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 TMEM151BQ8IW70 566 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 CCDC116Q8IYX3 515 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 C12orf45Q8N5I9 185 aaPredicted RBP12.46□□□□□ -0.41
SKA3-201ENST00000298260 DUSP19Q8WTR2 217 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 CPNE2Q96FN4 548 aaPredicted RBP12.46□□□□□ -0.41
SKA3-201ENST00000298260 TEAD3Q99594 435 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 TMPRSS13Q9BYE2 586 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 OR52D1Q9H346 318 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 BIN3Q9NQY0 253 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 ASF1BQ9NVP2 202 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 KLHL9Q9P2J3 617 aa12.46□□□□□ -0.41
SKA3-201ENST00000298260 HEATR5BQ9P2D3 2071 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 CENPVL1A0A0U1RR11 272 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 NARSO43776 548 aaKnown RBP12.46□□□□□ -0.42
SKA3-201ENST00000298260 FGF18O76093 207 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 LIPCP11150 499 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 CPN1P15169 458 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 TEAD1P28347 426 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 PTH2RP49190 550 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 NCBP2P52298 156 aaKnown RBP eCLIP12.46□□□□□ -0.42
SKA3-201ENST00000298260 PNLIPRP1P54315 467 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 PRPF38BQ5VTL8 546 aaKnown RBP12.46□□□□□ -0.42
SKA3-201ENST00000298260 FAM83HQ6ZRV2 1179 aaPredicted RBP12.46□□□□□ -0.42
SKA3-201ENST00000298260 HTR3DQ70Z44 454 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 GDF7Q7Z4P5 450 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 NAXDQ8IW45 347 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 SLC44A3Q8N4M1 653 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 OR8S1Q8NH09 359 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 FCAMRQ8WWV6 532 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 OTUB2Q96DC9 234 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 C7orf50Q9BRJ6 194 aaKnown RBP12.46□□□□□ -0.42
SKA3-201ENST00000298260 C14orf105Q9NVL8 296 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 DPP7Q9UHL4 492 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 SLC13A4Q9UKG4 626 aa12.46□□□□□ -0.42
SKA3-201ENST00000298260 SCN3AQ9NY46 2000 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 GSTZ1O43708 216 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 ADAMTS4O75173 837 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 INHAP05111 366 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 CDK2P24941 298 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 OR1D2P34982 312 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 PTGFRP43088 359 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 CBFBQ13951 182 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 FAM69AQ5T7M9 428 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 ADCK2Q7Z695 626 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 OR2AK2Q8NG84 335 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 OR51A7Q8NH64 312 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 SYNPRQ8TBG9 265 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 BRIX1Q8TDN6 353 aaKnown RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 RXFP4Q8TDU9 374 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 PLD4Q96BZ4 506 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 ZMYND19Q96E35 227 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 KLF16Q9BXK1 252 aaPredicted RBP12.45□□□□□ -0.42
SKA3-201ENST00000298260 TLNRD1Q9H1K6 362 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 NOX4Q9NPH5 578 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 LHX9Q9NQ69 397 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 PCDHB10Q9UN67 800 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 NPFFR2Q9Y5X5 522 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 TRAV27A0A087WT01 109 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 LRIT2A6NDA9 550 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 TTLL8A6PVC2 850 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 KIAA0355O15063 1070 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 SSX5O60225 188 aa12.45□□□□□ -0.42
SKA3-201ENST00000298260 SOCS5O75159 536 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms