RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 GDPD4Q6W3E5 623 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 ANGPTL5Q86XS5 388 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 CLECL1Q8IZS7 167 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 LRRC52Q8N7C0 313 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 C19orf47Q8N9M1 422 aaKnown RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 OR10R2Q8NGX6 335 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 PPTC7Q8NI37 304 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 GPR148Q8TDV2 347 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 IP6K3Q96PC2 410 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 ACBD6Q9BR61 282 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 ORAI3Q9BRQ5 295 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 SNHG12Q9BXW3 62 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 TMEM138Q9NPI0 162 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 MMP26Q9NRE1 261 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 DOK5Q9P104 306 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 NAP1L6A6NFF2 107 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF726A6NNF4 738 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 NUDT19A8MXV4 375 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 PYCARD-AS1I3L0S3 204 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 LDB2O43679 373 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 HYAL3O43820 417 aaPredicted RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 PCDH8O95206 1070 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 SNAI1O95863 264 aaPredicted RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 IFNA17P01571 189 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF286BP0CG31 522 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 DAOP14920 347 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 MNDAP41218 407 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 RBX1P62877 108 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 PJVKQ0ZLH3 352 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 PCBP2Q15366 365 aaKnown RBP eCLIP8.55□□□□□ -1.045e-6■■■■□ 22.8
PDGFC-201ENST00000274071 SLC25A30Q5SVS4 291 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF574Q6ZN55 896 aaPredicted RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 MUC20Q8N307 709 aaPredicted RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 TRAM1L1Q8N609 369 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 HJURPQ8NCD3 748 aaPredicted RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 FGF11Q92914 225 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 MVB12AQ96EY5 273 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 KLK11Q9UBX7 282 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 EXOSC1Q9Y3B2 195 aaKnown RBP8.55□□□□□ -1.04
PDGFC-201ENST00000274071 PLXNB2O15031 1838 aa8.55□□□□□ -1.04
PDGFC-201ENST00000274071 C11orf97A0A1B0GVM6 126 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 IDSB3KWA1 339 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CTDSPLO15194 276 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 YY2O15391 372 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MAFKO60675 156 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 THBS1P07996 1170 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 NDUFS1P28331 727 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CCND3P30281 292 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MAPK9P45984 424 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 GSK3AP49840 483 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 TOMM34Q15785 309 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ODF4Q2M2E3 257 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MESTQ5EB52 335 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 C11orf88Q6PI97 169 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 LANCL3Q6ZV70 420 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 SLC36A1Q7Z2H8 476 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 THOC6Q86W42 341 aaKnown RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 C1QL4Q86Z23 238 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 NKAPQ8N5F7 415 aaKnown RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 TFGQ92734 400 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 GAL3ST3Q96A11 431 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 POLR2J3Q9H1A7 115 aaKnown RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CERS4Q9HA82 394 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MAN2C1Q9NTJ4 1040 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 TMEM100Q9NV29 134 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 NLE1Q9NVX2 485 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CACFD1Q9UGQ2 172 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF230Q9UIE0 474 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 AKT3Q9Y243 479 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 TIMM10BQ9Y5J6 103 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 PHOX2AO14813 284 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 FFAR1O14842 300 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MATN3O15232 486 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 RGS9O75916 674 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 NDUFB6O95139 128 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CLUP10909 449 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 SNRPBP14678 240 aaKnown RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 GALP22466 123 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 AGTR1P30556 359 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 PCGF2P35227 344 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MTNR1AP48039 350 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 STC1P52823 247 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 NRG3P56975 720 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 EFNB1P98172 346 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF177Q13360 481 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MEF2DQ14814 521 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 RGNQ15493 299 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF791Q3KP31 576 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ACTBL2Q562R1 376 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 HFE2Q6ZVN8 426 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 ZNF467Q7Z7K2 595 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 PPP1R3BQ86XI6 285 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 OR56B1Q8NGI3 324 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 SPRYD4Q8WW59 207 aaPredicted RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 MRPS31Q92665 395 aaKnown RBP8.54□□□□□ -1.04
PDGFC-201ENST00000274071 C16orf70Q9BSU1 422 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 KATNBL1Q9H079 304 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CDT1Q9H211 546 aa8.54□□□□□ -1.04
PDGFC-201ENST00000274071 CCDC86Q9H6F5 360 aaKnown RBP8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 117.9 ms