RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 FCRLAQ7L513 359 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 RAB11FIP2Q7L804 512 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ZNF611Q8N823 705 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 BEST4Q8NFU0 473 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 OR2T27Q8NH04 317 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 OR14L1PQ8NHC6 308 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ASB17Q8WXJ9 295 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TCEAL3Q969E4 200 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TM4SF18Q96CE8 201 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 NKX2-4Q9H2Z4 354 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SMCHD1A6NHR9 2005 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SULT2B1O00204 365 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ABLIM3O94929 683 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 GAAP10253 952 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SNU13P55769 128 aaKnown RBP10.03□□□□□ -0.8
CD44-201ENST00000263398 RPS25P62851 125 aaKnown RBP10.03□□□□□ -0.8
CD44-201ENST00000263398 OR7A5Q15622 319 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 ZNF595Q8IYB9 648 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 PHOSPHO2Q8TCD6 241 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 GLIPR2Q9H4G4 154 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TAS2R16Q9NYV7 291 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 CA14Q9ULX7 337 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 POLHQ9Y253 713 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SCN9AQ15858 1988 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 SHANK3Q9BYB0 1731 aa10.03□□□□□ -0.8
CD44-201ENST00000263398 TMEM269A0A1B0GVZ9 245 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 METTL15A6NJ78 407 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 PRKAR1BP31321 381 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 LIPAP38571 399 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 HTRA3P83110 453 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 LTBQ06643 244 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 MBTPS1Q14703 1052 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 ADPRMQ3LIE5 342 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 OTUD1Q5VV17 481 aaPredicted RBP10.02□□□□□ -0.8
CD44-201ENST00000263398 DUS3LQ96G46 650 aaKnown RBP10.02□□□□□ -0.8
CD44-201ENST00000263398 AMDHD1Q96NU7 426 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 ZNF649Q9BS31 505 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 C1QTNF3Q9BXJ4 246 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 ZNF436Q9C0F3 470 aaPredicted RBP10.02□□□□□ -0.8
CD44-201ENST00000263398 NELFAQ9H3P2 528 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 ANKRD19PQ9H560 264 aa10.02□□□□□ -0.8
CD44-201ENST00000263398 FAM155AB1AL88 458 aaPredicted RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 GFRA2O00451 464 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 P2RX6O15547 441 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 IFNGR1P15260 489 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 CR2P20023 1033 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 APEX1P27695 318 aaKnown RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 YPEL5P62699 121 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 SIRPAP78324 504 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 SLC35A2P78381 396 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 IL20RBQ6UXL0 311 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 ADAMTSL4Q6UY14 1074 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 OR6T1Q8NGN1 323 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 NPRL2Q8WTW4 380 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 GHSRQ92847 366 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 ZBTB8AQ96BR9 441 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 S100PBPQ96BU1 408 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 PSD2Q9BQI7 771 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 ELOVL3Q9HB03 270 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 RANGRFQ9HD47 186 aaPredicted RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 ASF1BQ9NVP2 202 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 PLEKHJ1Q9NW61 149 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 SPATA6Q9NWH7 488 aaPredicted RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 PLEK2Q9NYT0 353 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 KCNIP1Q9NZI2 227 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 TUBGCP6Q96RT7 1819 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 OR2A25A4D2G3 310 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 ATG12O94817 140 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 PSMB1P20618 241 aaKnown RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 MAOAP21397 527 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 MTNR1BP49286 362 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 SQSTM1Q13501 440 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 EIF2S3LQ2VIR3 472 aaKnown RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 OR7E24Q6IFN5 339 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 FAM111BQ6SJ93 734 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 ABHD12BQ7Z5M8 362 aaPredicted RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 OR7G1Q8NGA0 311 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 TOE1Q96GM8 510 aaKnown RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 SNX18Q96RF0 628 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 KATNB1Q9BVA0 655 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 MKRN2Q9H000 416 aaKnown RBP10.02□□□□□ -0.81
CD44-201ENST00000263398 DNTTIP1Q9H147 329 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 SNX11Q9Y5W9 270 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 MEIS3P1A6NDR6 274 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 ZNF264O43296 627 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 BRINP1O60477 761 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 PEX14O75381 377 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 IGLV3-25P01717 112 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 TNFRSF4P43489 277 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 CAV2P51636 162 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 RAB38P57729 211 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 APOOLQ6UXV4 268 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 OR6V1Q8N148 313 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 LILRB4Q8NHJ6 448 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 AMBRA1Q9C0C7 1298 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 CHRDQ9H2X0 955 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 SLC6A20Q9NP91 592 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 CCL26Q9Y258 94 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 RHBDD3Q9Y3P4 386 aa10.02□□□□□ -0.81
CD44-201ENST00000263398 DVL2O14641 736 aa10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms