RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SDR9C7Q8NEX9 313 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 OR4K13Q8NH42 304 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 SYNPRQ8TBG9 265 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 CNRIP1Q96F85 164 aaPredicted RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 SLC38A1Q9H2H9 487 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 KCNK15Q9H427 330 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 TMEM231Q9H6L2 316 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 PLCL2Q9UPR0 1127 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 CAMK2AQ9UQM7 478 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 CNTRLQ7Z7A1 2325 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 TET1Q8NFU7 2136 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 KIF26AQ9ULI4 1882 aaPredicted RBP13.29□□□□□ -0.28
SDC1-201ENST00000254351 KIAA1671Q9BY89 1806 aa13.29□□□□□ -0.28
SDC1-201ENST00000254351 DISC1C4P0D8 188 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 NDUFS4O43181 175 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ERI3O43414 337 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 PTP4A3O75365 173 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 KRT33AO76009 404 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 LDOC1O95751 146 aaPredicted RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 CSN2P05814 226 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 PTH2RP49190 550 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 TAS2R38P59533 333 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ZCCHC12Q6PEW1 402 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 WDR88Q6ZMY6 472 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ZNF793Q6ZN11 406 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 DNAJA3Q96EY1 480 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 TSNAXQ99598 290 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 SGPP1Q9BX95 441 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 TSPAN10Q9H1Z9 355 aaPredicted RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 ESRP2Q9H6T0 727 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 EXOSC3Q9NQT5 275 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 NPDC1Q9NQX5 325 aaPredicted RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 SLC22A11Q9NSA0 550 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 KLHL28Q9NXS3 571 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 TRAV20A0A0B4J274 112 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ZIC2O95409 532 aaPredicted RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 CTSLP07711 333 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 FBXO45P0C2W1 286 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 TIMP2P16035 220 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 KCNJ3P48549 501 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 FXYD6P3P58550 94 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 GUCA2AQ02747 115 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 SHISA5Q8N114 240 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 OR6K6Q8NGW6 343 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ZNF461Q8TAF7 563 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 DUSP19Q8WTR2 217 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 RGMAQ96B86 450 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 SEC22AQ96IW7 307 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 CD180Q99467 661 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 SPG21Q9NZD8 308 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ZMAT5Q9UDW3 170 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 FBXL3Q9UKT7 428 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 PLXNB3Q9ULL4 1909 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ARPC4-TTLL3A0A0A6YYG9 625 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 HMGN1P05114 100 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 RD3LP0DJH9 198 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 MST1P26927 711 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 GPR1P46091 355 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 FOXK2Q01167 660 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 PCGF3Q3KNV8 242 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 HAGHLQ6PII5 290 aaPredicted RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 VN1R2Q8NFZ6 395 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 CDS1Q92903 461 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 ELP4Q96EB1 424 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 CPNE2Q96FN4 548 aaPredicted RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 MS4A8Q9BY19 250 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 IFT22Q9H7X7 185 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 SIDT1Q9NXL6 827 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 KLHL9Q9P2J3 617 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 MYEF2Q9P2K5 600 aaKnown RBP13.28□□□□□ -0.28
SDC1-201ENST00000254351 EDARQ9UNE0 448 aa13.28□□□□□ -0.28
SDC1-201ENST00000254351 HEATR5BQ9P2D3 2071 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 UNC119BA6NIH7 251 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 PLPP2O43688 288 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 SBK2P0C263 348 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 CDK2P24941 298 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 FPR3P25089 353 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 LUMP51884 338 aaPredicted RBP13.27□□□□□ -0.28
SDC1-201ENST00000254351 UBE3DQ7Z6J8 389 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 MUC20Q8N307 709 aaPredicted RBP13.27□□□□□ -0.28
SDC1-201ENST00000254351 TRAM1L1Q8N609 369 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 NUP43Q8NFH3 380 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 PXT1Q8NFP0 134 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 THEM6Q8WUY1 208 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 ZNF689Q96CS4 500 aaPredicted RBP13.27□□□□□ -0.28
SDC1-201ENST00000254351 FBXO17Q96EF6 278 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 PAWRQ96IZ0 340 aaKnown RBP13.27□□□□□ -0.28
SDC1-201ENST00000254351 VN1R3Q9BXE9 311 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 ANKRD19PQ9H560 264 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 NPTNQ9Y639 398 aa13.27□□□□□ -0.28
SDC1-201ENST00000254351 UBE2QL1A1L167 161 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 FAM25EA8MYX2 175 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 CCSO14618 274 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 TO15178 435 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 RAD1O60671 282 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 GALR3O60755 368 aaPredicted RBP13.27□□□□□ -0.29
SDC1-201ENST00000254351 TGM6O95932 706 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 MAS1P04201 325 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 CTSAP10619 480 aa13.27□□□□□ -0.29
SDC1-201ENST00000254351 PPP3CBP16298 524 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms