RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 DOC2BQ14184 412 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF273Q14593 569 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CYP51A1Q16850 503 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PODNL1Q6PEZ8 512 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MAMDC4Q6UXC1 1216 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PRICKLE2Q7Z3G6 844 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RNF113BQ8IZP6 322 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ADAMTS15Q8TE58 950 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 IL4I1Q96RQ9 567 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CHRDL1Q9BU40 450 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MCOLN1Q9GZU1 580 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CPVLQ9H3G5 476 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 EQTNQ9NQ60 294 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CLDND1Q9NY35 253 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CCDC167Q9P0B6 97 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CCDC88BA6NC98 1476 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 M0QXV9 152 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CEACAM5P06731 702 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 AKAIN1P0CW23 69 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 EPCAMP16422 314 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 HTR2AP28223 471 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 LTKP29376 864 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 IL13P35225 146 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RRAS2P62070 204 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SFT2D3Q587I9 215 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 FAM171BQ6P995 826 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 APTXQ7Z2E3 356 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CMTM8Q8IZV2 173 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 AMER2Q8N7J2 671 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 LRRC57Q8N9N7 239 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR2AK2Q8NG84 335 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ACTL9Q8TC94 416 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ATG4AQ8WYN0 398 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MCHR2Q969V1 340 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZFP3Q96NJ6 502 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PORCNQ9H237 461 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SGK2Q9HBY8 427 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NPAP1Q9NZP6 1156 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 KCNS2Q9ULS6 477 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZDHHC9Q9Y397 364 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 USP3Q9Y6I4 520 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CEPT1Q9Y6K0 416 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 C13orf42A0A1B0GVH6 325 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 EXOC1LA0A1B0GW35 172 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SLC17A3O00476 420 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PAGE1O75459 146 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 GLCEO94923 617 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 VENTXO95231 258 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CD1EP15812 388 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 IVDP26440 423 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 GMPRP36959 345 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 PNOCQ13519 176 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 GTF2H2Q13888 395 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM268Q5VZI3 342 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 GTF2H2CQ6P1K8 395 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ECHDC2Q86YB7 292 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CBR4Q8N4T8 237 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM199Q8N511 208 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR1N1Q8NGS0 311 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZFAND1Q8TCF1 268 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SKA2Q8WVK7 121 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 IL22RA2Q969J5 263 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 RNF157Q96PX1 679 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 FYTTD1Q96QD9 318 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TNFSF18Q9UNG2 199 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 SAP30O75446 220 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 VNN1O95497 513 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 UFM1P61960 85 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NKX3-2P78367 333 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NTHL1P78549 312 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DUSP8Q13202 625 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DPCR1Q3MIW9 517 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 FAM153CQ494X1 144 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MFSD14BQ5SR56 506 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 AGBL4Q5VU57 503 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CPZQ66K79 652 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 DUX4L9Q6RFH8 374 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM182Q6ZP80 229 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 KLHDC8BQ8IXV7 354 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ZNF439Q8NDP4 499 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 GRAPLQ8TC17 118 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CD180Q99467 661 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 YBX2Q9Y2T7 364 aaKnown RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 CORINQ9Y5Q5 1042 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 COLEC10Q9Y6Z7 277 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR7C1O76099 320 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 S1PR2O95136 353 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 IRF3Q14653 427 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ABRAXAS2Q15018 415 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ELOA3BQ3SY89 546 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 NKAPLQ5M9Q1 402 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 LIN28BQ6ZN17 250 aaKnown RBP eCLIP3.33□□□□□ -1.882e-6■■□□□ 12
SCN1A-221ENST00000641996 DPY19L2P2Q6ZN68 376 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MYPOPQ86VE0 399 aaPredicted RBP3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR6V1Q8N148 313 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ABHD11Q8NFV4 315 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 ELOA3Q8NG57 546 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 OR5K1Q8NHB7 308 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 TMEM159Q96B96 161 aa3.33□□□□□ -1.88
SCN1A-221ENST00000641996 MISP3Q96FF7 219 aa3.33□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms