RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FNDC9Q8TBE3 224 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 FIG4Q92562 907 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 OSTF1Q92882 214 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 ADGRG7Q96K78 797 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 SFXN3Q9BWM7 321 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 TRIM8Q9BZR9 551 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 ADGRG4Q8IZF6 3080 aa18.6■□□□□ 0.57
CLN3-240ENST00000631023 FKBP2P26885 142 aaKnown RBP18.59■□□□□ 0.57
CLN3-240ENST00000631023 EPS8Q12929 822 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 SELPLGQ14242 412 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 PPP4R4Q6NUP7 873 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 CLIP4Q8N3C7 705 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 OR10A6Q8NH74 314 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 SLC25A43Q8WUT9 341 aaPredicted RBP18.59■□□□□ 0.57
CLN3-240ENST00000631023 REXO5Q96IC2 774 aaKnown RBP18.59■□□□□ 0.57
CLN3-240ENST00000631023 ECSITQ9BQ95 431 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 SLC39A3Q9BRY0 314 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 CCDC106Q9BWC9 280 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 CXCL13O43927 109 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 ADAM11O75078 769 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 COX4I1P13073 169 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 PRKAR1BP31321 381 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 COPZ1P61923 177 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 POMZP3Q6PJE2 187 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 NET1Q7Z628 596 aaPredicted RBP18.59■□□□□ 0.57
CLN3-240ENST00000631023 GCNT2Q8N0V5 402 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 POU5F2Q8N7G0 328 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 BHLHE22Q8NFJ8 381 aaPredicted RBP18.59■□□□□ 0.57
CLN3-240ENST00000631023 SLC35B4Q969S0 331 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 CHRNA9Q9UGM1 479 aa18.59■□□□□ 0.57
CLN3-240ENST00000631023 PRORSD1PA6NEY8 169 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 AP3D1O14617 1153 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 HNRNPRO43390 633 aaKnown RBP18.58■□□□□ 0.56
CLN3-240ENST00000631023 GKN3PP0CG01 181 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 SHC1P29353 583 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 SLC1A3P43003 542 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 TFF3Q07654 80 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 FOXF2Q12947 444 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 GTF2IRD2BQ6EKJ0 949 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 GTF2IRD2Q86UP8 949 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 PTOV1Q86YD1 416 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 CPNE4Q96A23 557 aaPredicted RBP18.58■□□□□ 0.56
CLN3-240ENST00000631023 RCN3Q96D15 328 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 RNF122Q9H9V4 155 aa18.58■□□□□ 0.56
CLN3-240ENST00000631023 FXYD1O00168 92 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 COX6B1P14854 86 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 AQP1P29972 269 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 ASCL1P50553 236 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 POLR2HP52434 150 aaKnown RBP18.57■□□□□ 0.56
CLN3-240ENST00000631023 MAP2K6P52564 334 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 AGFG1P52594 562 aaKnown RBP18.57■□□□□ 0.56
CLN3-240ENST00000631023 RELL2Q8NC24 303 aaPredicted RBP18.57■□□□□ 0.56
CLN3-240ENST00000631023 CMTM5Q96DZ9 223 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 OR5B2Q96R09 309 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 PIGMQ9H3S5 423 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 EFCAB1Q9HAE3 211 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 CTPS2Q9NRF8 586 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 SLC13A4Q9UKG4 626 aa18.57■□□□□ 0.56
CLN3-240ENST00000631023 C19orf84I3L1E1 186 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 TFPIP10646 304 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 ACAA2P42765 397 aaKnown RBP18.56■□□□□ 0.56
CLN3-240ENST00000631023 CLK1P49759 484 aaKnown RBP18.56■□□□□ 0.56
CLN3-240ENST00000631023 RAC3P60763 192 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 RABL3Q5HYI8 236 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 INTS11Q5TA45 600 aaKnown RBP18.56■□□□□ 0.56
CLN3-240ENST00000631023 WBP2NLQ6ICG8 309 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 DHRS4L2Q6PKH6 230 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 ADGRG3Q86Y34 549 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 ARMC8Q8IUR7 673 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 SPOCK3Q9BQ16 436 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 MYLK2Q9H1R3 596 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 GLRX2Q9NS18 164 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 KLHL28Q9NXS3 571 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 AP3M1Q9Y2T2 418 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 ARL2BPQ9Y2Y0 163 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 CHST2Q9Y4C5 530 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 CELSR2Q9HCU4 2923 aa18.56■□□□□ 0.56
CLN3-240ENST00000631023 TMED7-TICAM2A0A0A6YYA0 188 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 A0A1W2PNV4 684 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 EEF1E1-BLOC1S5C9J1V9 151 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 SYT5O00445 386 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 AIM2O14862 343 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 EEF1E1O43324 174 aaKnown RBP18.55■□□□□ 0.56
CLN3-240ENST00000631023 AQP8O94778 261 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 PLGP00747 810 aaPredicted RBP18.55■□□□□ 0.56
CLN3-240ENST00000631023 TACR3P29371 465 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 PCGF2P35227 344 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 PCBP3P57721 371 aaKnown RBP18.55■□□□□ 0.56
CLN3-240ENST00000631023 SYT14P1Q58G82 188 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 ZNF787Q6DD87 383 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 ARPINQ7Z6K5 226 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 PIGWQ7Z7B1 504 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 PATL1Q86TB9 770 aaKnown RBP18.55■□□□□ 0.56
CLN3-240ENST00000631023 ZZZ3Q8IYH5 903 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 CADM2Q8N3J6 435 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 CNEP1R1Q8N9A8 125 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 ADAM19Q9H013 955 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 ENKD1Q9H0I2 346 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 PIF1Q9H611 641 aa18.55■□□□□ 0.56
CLN3-240ENST00000631023 FOXD3Q9UJU5 478 aaPredicted RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms