RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 MTDHQ86UE4 582 aaKnown RBP5.55□□□□□ -1.52
CUX1-220ENST00000607092 TMEM151AQ8N4L1 468 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 TMCO5AQ8N6Q1 288 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 ZNF433Q8N7K0 673 aaPredicted RBP5.55□□□□□ -1.52
CUX1-220ENST00000607092 CCNYL1Q8N7R7 359 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 GATSQ8NAP1 163 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 SLC16A11Q8NCK7 471 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 POC1BQ8TC44 478 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 GPR119Q8TDV5 335 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 C10orf105Q8TEF2 133 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 ZFAND2BQ8WV99 257 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 OR5P2Q8WZ92 322 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 ZNF317Q96PQ6 595 aaPredicted RBP5.55□□□□□ -1.52
CUX1-220ENST00000607092 OR5B2Q96R09 309 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 KCNS3Q9BQ31 491 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 ACTRT3Q9BYD9 372 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 SRXN1Q9BYN0 137 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 CDC42EP4Q9H3Q1 356 aaKnown RBP5.55□□□□□ -1.52
CUX1-220ENST00000607092 OBP2BQ9NPH6 170 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 FAM53CQ9NYF3 392 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 SH3BP4Q9P0V3 963 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 ICAM5Q9UMF0 924 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 NOSIPQ9Y314 301 aaKnown RBP5.55□□□□□ -1.52
CUX1-220ENST00000607092 HDGFL3Q9Y3E1 203 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 DTNAQ9Y4J8 743 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 POLR3HQ9Y535 204 aaPredicted RBP5.55□□□□□ -1.52
CUX1-220ENST00000607092 TIMM22Q9Y584 194 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 PCDHB14Q9Y5E9 798 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 CR1P17927 2039 aa5.55□□□□□ -1.52
CUX1-220ENST00000607092 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ESYT3A0FGR9 886 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 B9A039 149 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 E7EQL1 145 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 J3QL48 77 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SMAD9O15198 467 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 GPRIN2O60269 458 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 RAMP1O60894 148 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 NDUFS7O75251 213 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 GLRA3O75311 464 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 LYPLA1O75608 230 aaPredicted RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 PDE5AO76074 875 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SNUPNO95149 360 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 HMGN2P05204 90 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 GUSBP08236 651 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ACP2P11117 423 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 APEHP13798 732 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 UQCRBP14927 111 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 DIO1P49895 249 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ZNF83P51522 516 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 CCR4P51679 360 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SLC16A1P53985 500 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 DNAJB13P59910 316 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 IRX1P78414 480 aaPredicted RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 CHRNEQ04844 493 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 PDE7AQ13946 482 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 LASP1Q14847 261 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 TRADDQ15628 312 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 TSC22D1Q15714 1073 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 CD226Q15762 336 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SYT14P1Q58G82 188 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 FAM120AOSQ5T036 256 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 DCST2Q5T1A1 773 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ABLIM2Q6H8Q1 611 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SEZ6L2Q6UXD5 910 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 FRMD7Q6ZUT3 714 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 RPS27LQ71UM5 84 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 TRMT10CQ7L0Y3 403 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 EIF3MQ7L2H7 374 aaKnown RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 HDXQ7Z353 690 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 IFT20Q8IY31 132 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ZNF525Q8N782 197 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ATP6V1C2Q8NEY4 427 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SFXN5Q8TD22 340 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 PMM1Q92871 262 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 NEUROG1Q92886 237 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 HPS1Q92902 700 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 GIMAP5Q96F15 307 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 MUS81Q96NY9 551 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 NAA11Q9BSU3 229 aaPredicted RBP5.54□□□□□ -1.52
CUX1-220ENST00000607092 NMUR2Q9GZQ4 415 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 GSTO2Q9H4Y5 243 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 PIF1Q9H611 641 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 CXorf36Q9H7Y0 433 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 MANSC1Q9H8J5 431 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 COQ10BQ9H8M1 238 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ANKZF1Q9H8Y5 726 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 PPCSQ9HAB8 311 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 POLE3Q9NRF9 147 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ACER3Q9NUN7 267 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 EXD2Q9NVH0 621 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 TMEM216Q9P0N5 145 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 UPB1Q9UBR1 384 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.54□□□□□ -1.527e-6■□□□□ 9.2
CUX1-220ENST00000607092 TRAPPC4Q9Y296 219 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SLC35A3Q9Y2D2 325 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SLC9A8Q9Y2E8 581 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 CARD8Q9Y2G2 431 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 SLC25A15Q9Y619 301 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 ATP23Q9Y6H3 246 aa5.54□□□□□ -1.52
CUX1-220ENST00000607092 V9GYY5 206 aaPredicted RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms