RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ESRP2Q9H6T0 727 aaKnown RBP6.75□□□□□ -1.33
CUX1-219ENST00000606749 SSU72Q9NP77 194 aaKnown RBP6.75□□□□□ -1.33
CUX1-219ENST00000606749 POLE3Q9NRF9 147 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 ACER3Q9NUN7 267 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 PRSS50Q9UI38 385 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 HAO1Q9UJM8 370 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 SLC35A3Q9Y2D2 325 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 WDR45Q9Y484 360 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 RNF115Q9Y4L5 304 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 ROS1P08922 2347 aa6.75□□□□□ -1.33
CUX1-219ENST00000606749 PRAMEF27A3QJZ7 478 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 TM9SF1O15321 606 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 CLOCKO15516 846 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 KIAA0513O60268 411 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 LYZL6O75951 148 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 PGM3O95394 542 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 C1QCP02747 245 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 SOD3P08294 240 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 TFPIP10646 304 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 LBPP18428 481 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 BGNP21810 368 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 IGHV1-2P23083 117 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 PCSK6P29122 969 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 S100A3P33764 101 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 NTF4P34130 210 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 RYKP34925 604 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 RPS4XP62701 263 aaKnown RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 CSNK2A1P68400 391 aaPredicted RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 KCNJ10P78508 379 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 BSPH1Q075Z2 132 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 FUT5Q11128 374 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 STX3Q13277 289 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 TNK1Q13470 666 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 PDK3Q15120 406 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 PGGHGQ32M88 737 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ZNF672Q499Z4 452 aaPredicted RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 SYT14P1Q58G82 188 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 TNFAIP8L3Q5GJ75 292 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 SPANXN4Q5MJ08 99 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 FRRS1Q6ZNA5 592 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 GALNT5Q7Z7M9 940 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 PRIMA1Q86XR5 153 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ADGRG3Q86Y34 549 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ZNF100Q8IYN0 542 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 LRRC34Q8IZ02 419 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ZNF563Q8TA94 476 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 SMAP2Q8WU79 429 aaPredicted RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 SLC25A43Q8WUT9 341 aaPredicted RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 NEUROG1Q92886 237 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 FBXW5Q969U6 566 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 NEURL3Q96EH8 262 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ARL5BQ96KC2 179 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 TEX37Q96LM6 180 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 SLC35A5Q9BS91 424 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 PARD6BQ9BYG5 372 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 POTEKPQ9BYX7 375 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 NUF2Q9BZD4 464 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 MEAF6Q9HAF1 191 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 CTPS2Q9NRF8 586 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 ST6GALNAC1Q9NSC7 600 aaPredicted RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 PNPOQ9NVS9 261 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.74□□□□□ -1.33
CUX1-219ENST00000606749 BTNL2Q9UIR0 455 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 V9GYY5 206 aaPredicted RBP6.74□□□□□ -1.33
CUX1-219ENST00000606749 USF3Q68DE3 2245 aa6.74□□□□□ -1.33
CUX1-219ENST00000606749 IGKV3D-15A0A087WSY6 115 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CCDC154A6NI56 674 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CLDN24A6NM45 220 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 ZNF716A6NP11 495 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 INAFM1C9JVW0 142 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 E9PBE3 544 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 HMGN4O00479 90 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 RAMP1O60894 148 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 ADAM11O75078 769 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 PMS2P2O95744 297 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CD8AP01732 235 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 FESP07332 822 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 THBS1P07996 1170 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 ALDOCP09972 364 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 GGT1P19440 569 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 COX5AP20674 150 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 FKBP2P26885 142 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 IL12AP29459 219 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CHI3L1P36222 383 aaPredicted RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 IDH2P48735 452 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 CLK1P49759 484 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 CLNS1AP54105 237 aaKnown RBP6.73□□□□□ -1.33
CUX1-219ENST00000606749 NME5P56597 212 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 UFM1P61960 85 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 H3F3AP84243 136 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 PLAURQ03405 335 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CHRNEQ04844 493 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 PPA1Q15181 289 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 STK11Q15831 433 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 SYPL1Q16563 259 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 CLEC12BQ2HXU8 276 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 DPY19L1Q2PZI1 675 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 FAM174BQ3ZCQ3 159 aa6.73□□□□□ -1.33
CUX1-219ENST00000606749 GPAT3Q53EU6 434 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms