RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 METTL4Q8N3J2 472 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 TOMM40LQ969M1 308 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 A0A1W2PQ09 198 aa19.11■□□□□ 0.65
UPF1-207ENST00000599848 SEC61A1P61619 476 aaKnown RBP19.11■□□□□ 0.65
UPF1-207ENST00000599848 TMEM269A0A1B0GVZ9 245 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 TARM1B6A8C7 271 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 ARL16Q0P5N6 197 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 LAPTM4AQ15012 233 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 ZNF181Q2M3W8 571 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 ASB16Q96NS5 453 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 NMNAT1Q9HAN9 279 aaPredicted RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 KCNIP2Q9NS61 270 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 PROCRQ9UNN8 238 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 PRELID1Q9Y255 219 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 A8MVM7 634 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 AP1G1O43747 822 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 EIF4E2O60573 245 aaKnown RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 KCNK2O95069 426 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 TAS2R46P59540 309 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 MARCH8Q5T0T0 291 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 UBE2UQ5VVX9 321 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 CPOQ8IVL8 374 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 NAGSQ8N159 534 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 SERINC4A6NH21 518 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 CD8B2A6NJW9 211 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 CD8BP10966 210 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 SGSHP51688 502 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 FXYD4P59646 89 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 ZNF300Q96RE9 604 aaPredicted RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 INTS6Q9UL03 887 aaKnown RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 CEBPZOSA8MTT3 80 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 WNT4P56705 351 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 REEP5Q00765 189 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 GPR18Q14330 331 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 EXOSC7Q15024 291 aaKnown RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 TMEM71Q6P5X7 295 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 OR51B6Q9H340 312 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 CALHM2Q9HA72 323 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 OR6C76A6NM76 312 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 BCAS1O75363 584 aaPredicted RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 RAB40BQ12829 278 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 ADAMTS19Q8TE59 1207 aa19.1■□□□□ 0.65
UPF1-207ENST00000599848 DAZAP1Q96EP5 407 aaKnown RBP19.1■□□□□ 0.65
UPF1-207ENST00000599848 GPRIN2O60269 458 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 TBX10O75333 385 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 FCER2P06734 321 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 KITLGP21583 273 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 FGFBP1Q14512 234 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 ZC3HAV1Q7Z2W4 902 aaKnown RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 AMIGO3Q86WK7 504 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 SLC39A13Q96H72 371 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 NXF5Q9H1B4 397 aaKnown RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 OR14J1Q9UGF5 321 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 ZCWPW2A0A1B0GU75 182 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 YY2O15391 372 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 DENRO43583 198 aaKnown RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 SH3BP2P78314 561 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 MFAP5Q13361 173 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 NKAIN1Q4KMZ8 207 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 C22orf42Q6IC83 251 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 MAFIPQ8WZ33 124 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 EIF5A2Q9GZV4 153 aaKnown RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 NALCNQ8IZF0 1738 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 GSTP1P09211 210 aaKnown RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 CCR7P32248 378 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 CD68P34810 354 aaPredicted RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 CD97P48960 835 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 ELAVL1Q15717 326 aaKnown RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 ZNF813Q6ZN06 617 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 FNDC9Q8TBE3 224 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 CCDC74AQ96AQ1 378 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 CPPED1Q9BRF8 314 aaPredicted RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 SDR39U1Q9NRG7 319 aaPredicted RBP19.09■□□□□ 0.65
UPF1-207ENST00000599848 RHBDD3Q9Y3P4 386 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 GABARAPH6UMI1 98 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 GABARAPO95166 117 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 ERVK-25P63136 954 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 PM20D2Q8IYS1 436 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 OR6Q1Q8NGQ2 317 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 FBXL20Q96IG2 436 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 DHRS4Q9BTZ2 278 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 EGLN3Q9H6Z9 239 aa19.09■□□□□ 0.65
UPF1-207ENST00000599848 EME2A4GXA9 379 aaPredicted RBP19.08■□□□□ 0.65
UPF1-207ENST00000599848 ZNF732B4DXR9 585 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 SPINT2O43291 252 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 SC5DO75845 299 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 ARSBP15848 533 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 DUSP7Q16829 419 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 SBSNQ6UWP8 590 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 EXD3Q8N9H8 876 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 FAM83FQ8NEG4 500 aaPredicted RBP19.08■□□□□ 0.65
UPF1-207ENST00000599848 ABHD11Q8NFV4 315 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 NPRL2Q8WTW4 380 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 SGK3Q96BR1 496 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 TMEM43Q9BTV4 400 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 ABCG5Q9H222 651 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 CNOT11Q9UKZ1 510 aaKnown RBP19.08■□□□□ 0.65
UPF1-207ENST00000599848 TRAPPC2LQ9UL33 140 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 LOXL2Q9Y4K0 774 aa19.08■□□□□ 0.65
UPF1-207ENST00000599848 A0A0A6YYH2 397 aa19.08■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms