RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 GTF2H4Q92759 462 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 EBF4Q9BQW3 602 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 GPATCH1Q9BRR8 931 aaKnown RBP12.66□□□□□ -0.38
LIG1-218ENST00000599322 KLHL4Q9C0H6 718 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 SLC38A1Q9H2H9 487 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 PLSCR4Q9NRQ2 329 aa12.66□□□□□ -0.38
LIG1-218ENST00000599322 A0A0G2JND7 137 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 CFAP73A6NFT4 308 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 ANGPT2O15123 496 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 NTN1O95631 604 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 CHRM4P08173 479 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 PPP3CBP16298 524 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 IL11P20809 199 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 FAM27E3Q08E93 113 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 FUT5Q11128 374 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 TESK1Q15569 626 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 ZNF239Q16600 458 aaKnown RBP12.65□□□□□ -0.38
LIG1-218ENST00000599322 SYT14P1Q58G82 188 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 METTL21CQ5VZV1 264 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 KRT73Q86Y46 540 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 FAM71CQ8NEG0 241 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 DDIT4LQ96D03 193 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 ZG16BQ96DA0 208 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 NPAS1Q99742 590 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 SPATA5L1Q9BVQ7 753 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 QRSL1Q9H0R6 528 aaKnown RBP12.65□□□□□ -0.38
LIG1-218ENST00000599322 NPHS2Q9NP85 383 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.65□□□□□ -0.38
LIG1-218ENST00000599322 CHRNA9Q9UGM1 479 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 LEF1Q9UJU2 399 aaPredicted RBP12.65□□□□□ -0.38
LIG1-218ENST00000599322 DCTN4Q9UJW0 460 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 SLC13A4Q9UKG4 626 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 PCDHB14Q9Y5E9 798 aa12.65□□□□□ -0.38
LIG1-218ENST00000599322 CENPVL1A0A0U1RR11 272 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 A0A1W2PNR3 127 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 A0A1W2PP18 115 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 ETV2O00321 342 aaPredicted RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 EDF1O60869 148 aaKnown RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 DNAJA2O60884 412 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 YES1P07947 543 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 THBS1P07996 1170 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 DNASE1P24855 282 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 CXCR1P25024 350 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 POLR2HP52434 150 aaKnown RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 RGNQ15493 299 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 PRAMEF8Q5VWM4 474 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 PRAMEF7Q5VXH5 474 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 TMPPEQ6ZT21 453 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 HMGN2P46Q86SG4 172 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 BBS10Q8TAM1 723 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 RNF128Q8TEB7 428 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 SLC38A5Q8WUX1 472 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 CNOT9Q92600 299 aaKnown RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 THOC1Q96FV9 657 aaKnown RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 AURKBQ96GD4 344 aaPredicted RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 HDHD5Q9BXW7 423 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 PAIP1Q9H074 479 aaKnown RBP12.64□□□□□ -0.39
LIG1-218ENST00000599322 C12orf49Q9H741 205 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 EMC3Q9P0I2 261 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 KLHL13Q9P2N7 655 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 NDUFAF1Q9Y375 327 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 HDGFL3Q9Y3E1 203 aa12.64□□□□□ -0.39
LIG1-218ENST00000599322 KIAA1549Q9HCM3 1950 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 PCNX3Q9H6A9 2034 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 PRAMEF27A3QJZ7 478 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 FAAHO00519 579 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 DNPH1O43598 174 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 EFNA2O43921 213 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 CGAP01215 116 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 VIMP08670 466 aaKnown RBP12.63□□□□□ -0.39
LIG1-218ENST00000599322 TFPTP0C1Z6 253 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 CCNA2P20248 432 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 SHC1P29353 583 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 AGTR1P30556 359 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 UGT2B10P36537 528 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 SLC1A3P43003 542 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 DIO1P49895 249 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 RASGEF1BQ0VAM2 473 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 GTDC1Q4AE62 458 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 ZNF311Q5JNZ3 666 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 GCNT6Q5T4J0 391 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 MRPL2Q5T653 305 aaKnown RBP12.63□□□□□ -0.39
LIG1-218ENST00000599322 ZNF474Q6S9Z5 364 aaPredicted RBP12.63□□□□□ -0.39
LIG1-218ENST00000599322 CDC20BQ86Y33 519 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 MED12LQ86YW9 2145 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 TMEM19Q96HH6 336 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 USB1Q9BQ65 265 aaKnown RBP12.63□□□□□ -0.39
LIG1-218ENST00000599322 KLHDC3Q9BQ90 382 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 NAA11Q9BSU3 229 aaPredicted RBP12.63□□□□□ -0.39
LIG1-218ENST00000599322 A4GALTQ9NPC4 353 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 CTPS2Q9NRF8 586 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 KLHL28Q9NXS3 571 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 RPS6KB2Q9UBS0 482 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 GPR52Q9Y2T5 361 aa12.63□□□□□ -0.39
LIG1-218ENST00000599322 ANKHD1Q8IWZ3 2542 aaKnown RBP12.63□□□□□ -0.39
LIG1-218ENST00000599322 TMED7-TICAM2A0A0A6YYA0 188 aa12.62□□□□□ -0.39
LIG1-218ENST00000599322 PRORSD1PA6NEY8 169 aa12.62□□□□□ -0.39
LIG1-218ENST00000599322 CLDN24A6NM45 220 aa12.62□□□□□ -0.39
LIG1-218ENST00000599322 GPR171O14626 319 aa12.62□□□□□ -0.39
LIG1-218ENST00000599322 EIF1BO60739 113 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms