RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 SYT14P1Q58G82 188 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 TTMPQ5BVD1 217 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 PAMR1Q6UXH9 720 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 C22orf34Q6ZV56 151 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 NUFIP2Q7Z417 695 aaKnown RBP9.37□□□□□ -0.91
CCDC9-203ENST00000596938 GRINAQ7Z429 371 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 ADGRG3Q86Y34 549 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 TUSC5Q8IXB3 177 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 ZNF563Q8TA94 476 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 CNOT9Q92600 299 aaKnown RBP9.37□□□□□ -0.91
CCDC9-203ENST00000596938 GTF2H4Q92759 462 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 VPS33AQ96AX1 596 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 MARK4Q96L34 752 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 ALPK1Q96QP1 1244 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 OR5B2Q96R09 309 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 TPT1P8Q9HAU6 139 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 TCF7L2Q9NQB0 619 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 CALML5Q9NZT1 146 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 KLHL9Q9P2J3 617 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 P2RX2Q9UBL9 471 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 ING1Q9UK53 422 aaPredicted RBP9.37□□□□□ -0.91
CCDC9-203ENST00000596938 PLEKHA6Q9Y2H5 1048 aa9.37□□□□□ -0.91
CCDC9-203ENST00000596938 SPIN1Q9Y657 262 aaPredicted RBP9.37□□□□□ -0.91
CCDC9-203ENST00000596938 PCNX3Q9H6A9 2034 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ZNF724A8MTY0 619 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 SULT2B1O00204 365 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 POLR3GO15318 223 aaPredicted RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 SIAH2O43255 324 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 CYTIPO60759 359 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ADAM11O75078 769 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 THBDP07204 575 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ETFAP13804 333 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 H2AFXP16104 143 aaPredicted RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 SLC1A3P43003 542 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 CRATP43155 626 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 IDH2P48735 452 aaKnown RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 DIO1P49895 249 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 STX1BP61266 288 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 KEAP1Q14145 624 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 P2RY6Q15077 328 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 PDK3Q15120 406 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 POU4F3Q15319 338 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ZSWIM7Q19AV6 140 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ANKRD34AQ69YU3 496 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 BLOC1S3Q6QNY0 202 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 TFAP2EQ6VUC0 442 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ZNF550Q7Z398 422 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 MTDHQ86UE4 582 aaKnown RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 PEX5LQ8IYB4 626 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ZNF440Q8IYI8 595 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 GABRG1Q8N1C3 465 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 GOLGA6L1Q8N7Z2 621 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 STEAP2Q8NFT2 490 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 OR9I1Q8NGQ6 314 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 PNPT1Q8TCS8 783 aaKnown RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 SLC38A5Q8WUX1 472 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 USB1Q9BQ65 265 aaKnown RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 PSD2Q9BQI7 771 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 PAIP1Q9H074 479 aaKnown RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 C12orf49Q9H741 205 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 CTPS2Q9NRF8 586 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 INTS9Q9NV88 658 aaKnown RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 ARGLU1Q9NWB6 273 aaPredicted RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 C6orf203Q9P0P8 240 aaPredicted RBP9.36□□□□□ -0.91
CCDC9-203ENST00000596938 CHRNA9Q9UGM1 479 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 TRAPPC4Q9Y296 219 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 HDGFL3Q9Y3E1 203 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 PCDHB14Q9Y5E9 798 aa9.36□□□□□ -0.91
CCDC9-203ENST00000596938 TEP1Q99973 2627 aaKnown RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 MED12LQ86YW9 2145 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 DSPPQ9NZW4 1301 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 NUP214P35658 2090 aaPredicted RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 IGKV3D-15A0A087WSY6 115 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 A0A0G2JPF8 293 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 CFAP73A6NFT4 308 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 HNRNPCL2B2RXH8 293 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 HNRNPCL3B7ZW38 293 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 CLIC1O00299 241 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 SMAD9O15198 467 aaKnown RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 ZNF208O43345 1280 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 KLF4O43474 513 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 DNPH1O43598 174 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 HNRNPCL1O60812 293 aaKnown RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 GCM2O75603 506 aaPredicted RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 CNOT4O95628 575 aaKnown RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 PMS2P2O95744 297 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 THBS1P07996 1170 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 HNRNPCL4P0DMR1 293 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 TFPIP10646 304 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 BMP2P12643 396 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 CD53P19397 219 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 OR3A2P47893 321 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 POLR2HP52434 150 aaKnown RBP9.35□□□□□ -0.91
CCDC9-203ENST00000596938 CRISP3P54108 245 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 AQP5P55064 265 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 DSTNP60981 165 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 PPP2R2AP63151 447 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 RASGEF1BQ0VAM2 473 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 RGNQ15493 299 aa9.35□□□□□ -0.91
CCDC9-203ENST00000596938 DEFB113Q30KQ7 82 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms