RNA–Protein interactions for RNA: ENST00000578700.5

SS18-210, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-210ENST00000578700 KCTD21Q4G0X4 260 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 RBM48Q5RL73 367 aaKnown RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 USP51Q70EK9 711 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ZNF550Q7Z398 422 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 TSEN54Q7Z6J9 526 aaKnown RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 RBM45Q8IUH3 476 aaKnown RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 CMIPQ8IY22 773 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 DEPDC4Q8N2C3 294 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ZNF615Q8N8J6 731 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 AQP11Q8NBQ7 271 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 TSPAN14Q8NG11 270 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 OR6T1Q8NGN1 323 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 C14orf79Q96F83 325 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 LCORQ96JN0 433 aaPredicted RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 GAL3ST4Q96RP7 486 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 MBOAT4Q96T53 435 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 MCHR1Q99705 422 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ZNF559Q9BR84 538 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ITPAQ9BY32 194 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 HES7Q9BYE0 225 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 UCK2Q9BZX2 261 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 TMEM27Q9HBJ8 222 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 MCCC2Q9HCC0 563 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 VCX3AQ9NNX9 186 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 TESQ9UGI8 421 aaKnown RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 TEKT2Q9UIF3 430 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 ACAD8Q9UKU7 415 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 GPR55Q9Y2T6 319 aaPredicted RBP9.29□□□□□ -0.92
SS18-210ENST00000578700 MEMO1Q9Y316 297 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 CLDN16Q9Y5I7 305 aa9.29□□□□□ -0.92
SS18-210ENST00000578700 A0A087WXM4 84 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 TRBV4-1A0A0J9YWV2 114 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 FRG2CA6NGY1 282 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 CPSF4LA6NMK7 179 aaKnown RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 HRKO00198 91 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 SCDO00767 359 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 FFAR1O14842 300 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 FMO6PO60774 539 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 MITFO75030 526 aaPredicted RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 CYP7B1O75881 506 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 GNAO1P09471 354 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 ABOP16442 354 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 ENDOUP21128 410 aaKnown RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 RPS4Y1P22090 263 aaKnown RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 EEF1B2P24534 225 aaKnown RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 IL12BP29460 328 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 RYKP34925 604 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 LIMS1P48059 325 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 ART1P52961 327 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 ATP12AP54707 1039 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 NRG3P56975 720 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 COPZ1P61923 177 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 MYBPC1Q00872 1141 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 COX10Q12887 443 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 PCOLCEQ15113 449 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 CPEB4Q17RY0 729 aaKnown RBP eCLIP9.28□□□□□ -0.92
SS18-210ENST00000578700 BTBD16Q32M84 506 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 ENTPD8Q5MY95 495 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 MRPL2Q5T653 305 aaKnown RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 AP1ARQ63HQ0 302 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 ZNF730Q6ZMV8 503 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 TSPYL5Q86VY4 417 aaPredicted RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 ZNF440Q8IYI8 595 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 SHISA5Q8N114 240 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 PARP8Q8N3A8 854 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 OR5L2Q8NGL0 311 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 PIGXQ8TBF5 258 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 RNF217Q8TC41 542 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 CA5BP1Q8WTZ4 195 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 SLC35B4Q969S0 331 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 GTPBP3Q969Y2 492 aaKnown RBP9.28□□□□□ -0.92
SS18-210ENST00000578700 ZG16BQ96DA0 208 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 DHRS1Q96LJ7 313 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 GPR137Q96N19 417 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 LPAR4Q99677 370 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 TEX12Q9BXU0 123 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 GABARAPL3Q9BY60 117 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 TRIM2Q9C040 744 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 IMPAD1Q9NX62 359 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 SCN3BQ9NY72 215 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 RPS6KB2Q9UBS0 482 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 A4GNTQ9UNA3 340 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 PCDHGB6Q9Y5F9 930 aa9.28□□□□□ -0.92
SS18-210ENST00000578700 SH3PXD2BA1X283 911 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 TRAPPC13A5PLN9 417 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 CDHR4A6H8M9 788 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 H3BN98 237 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 MPZL2O60487 215 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 TPST2O60704 377 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 CLIC3O95833 236 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 IGKV3-11P04433 115 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 POU2F1P14859 743 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 CBLP22681 906 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 CLK3P49761 638 aaKnown RBP9.27□□□□□ -0.93
SS18-210ENST00000578700 CDC42P60953 191 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 CSNK2BP67870 215 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 TUBA4AP68366 448 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 RPP38P78345 283 aaKnown RBP9.27□□□□□ -0.93
SS18-210ENST00000578700 HSF1Q00613 529 aa9.27□□□□□ -0.93
SS18-210ENST00000578700 OC90Q02509 493 aaPredicted RBP9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms