RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 KLRB1Q12918 225 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ZRSR1Q15695 479 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 XKR7Q5GH72 579 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 FGD3Q5JSP0 725 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 RNASEKQ6P5S7 137 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 DOK6Q6PKX4 331 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ZNF562Q6V9R5 426 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 Q71RC1 249 aaPredicted RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 CCDC80Q76M96 950 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ACOT1Q86TX2 421 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LINC00518Q8N0U6 118 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 PYROXD2Q8N2H3 581 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 GPR137CQ8N3F9 429 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 CCDC185Q8N715 623 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ZNF383Q8NA42 475 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 SPERTQ8NA61 448 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 STXBP6Q8NFX7 210 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LRRC15Q8TF66 581 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ST8SIA1Q92185 356 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LRRC39Q96DD0 335 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 TCEAL4Q96EI5 215 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 PELI1Q96FA3 418 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 TECTBQ96PL2 329 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 P2RY13Q9BPV8 354 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 TMEM175Q9BSA9 504 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 DCTN5Q9BTE1 182 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 TSSK1BQ9BXA7 367 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 SLC7A5P2Q9GIP4 190 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 LRRC4Q9HBW1 653 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 MCCC2Q9HCC0 563 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ZNF71Q9NQZ8 489 aaPredicted RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 TUBG2Q9NRH3 451 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 AGPAT3Q9NRZ7 376 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 MED17Q9NVC6 651 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 FAM120CQ9NX05 1096 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 OCIAD1Q9NX40 245 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 GPR83Q9NYM4 423 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 NLGN3Q9NZ94 848 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 ZNF639Q9UID6 485 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 VDAC3Q9Y277 283 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 MEMO1Q9Y316 297 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 PRKDCP78527 4128 aaKnown RBP5.02□□□□□ -1.61
VPS53-219ENST00000576019 PKDREJQ9NTG1 2253 aa5.02□□□□□ -1.61
VPS53-219ENST00000576019 KNL1Q8NG31 2342 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 ZNF106Q9H2Y7 1883 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 IGLV5-39A0A0G2JS06 123 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 ASPDHA6ND91 283 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 ACOD1A6NK06 481 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 IMPA2O14732 288 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 STX7O15400 261 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 KIAA0513O60268 411 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 TPST2O60704 377 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 SHOX2O60902 331 aaPredicted RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 IGLV2-14P01704 120 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 KRT6AP02538 564 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 SLC35G4P0C7Q5 338 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 UBTFL6P0CB48 400 aaPredicted RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 HOXB2P14652 356 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 GCFC2P16383 781 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 UCP1P25874 307 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 MAT2AP31153 395 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 HNRNPH3P31942 346 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 HSD17B2P37059 387 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 CCR2P41597 374 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 RPS5P46782 204 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 RFX2P48378 723 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 FUT6P51993 359 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 OSTNP61366 133 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 BDH1Q02338 343 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 TAF13Q15543 124 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 DUSP5Q16690 384 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 LCN1P1Q5VSP4 162 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 LIPNQ5VXI9 398 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 OLFML1Q6UWY5 402 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 BBS1Q8NFJ9 593 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 OR4D5Q8NGN0 318 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 OR9A1PQ8NGU1 263 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 PRSS3P2Q8NHM4 247 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 M1APQ8TC57 530 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 SCFD1Q8WVM8 642 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 EFHD2Q96C19 240 aaPredicted RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 HAVCR1Q96D42 359 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 C19orf60Q96EN9 201 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 ATP6V1G3Q96LB4 118 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 PSD2Q9BQI7 771 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 PRSS22Q9GZN4 317 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 POLR3FQ9H1D9 316 aaPredicted RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 AUNIPQ9H7T9 357 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 GEMIN7Q9H840 131 aaKnown RBP5.01□□□□□ -1.61
VPS53-219ENST00000576019 POLE4Q9NR33 117 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 PRDM4Q9UKN5 801 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 MMP17Q9ULZ9 603 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 GINS2Q9Y248 185 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 HS3ST3B1Q9Y662 390 aa5.01□□□□□ -1.61
VPS53-219ENST00000576019 TMEM131Q92545 1883 aa5□□□□□ -1.61
VPS53-219ENST00000576019 NFASCO94856 1347 aa5□□□□□ -1.61
VPS53-219ENST00000576019 A0A087WZ39 114 aa5□□□□□ -1.61
VPS53-219ENST00000576019 IGKV6D-41A0A0C4DH26 115 aa5□□□□□ -1.61
VPS53-219ENST00000576019 A0A1W2PPI3 338 aa5□□□□□ -1.61
VPS53-219ENST00000576019 GOLGA8TH3BQL2 631 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms