RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ATP6V1G1O75348 118 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 CRCPO75575 148 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 CIB2O75838 187 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SYNGR4O95473 234 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 H6PDO95479 791 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 PLGP00747 810 aaPredicted RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 CD8AP01732 235 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 C1QCP02747 245 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ALOX5P09917 674 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 KRT4P19013 534 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ELK4P28324 431 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ADH6P28332 368 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 NTF4P34130 210 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SERPINB4P48594 390 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 P2RX1P51575 399 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZNF41P51814 821 aaPredicted RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 SLC18A1P54219 525 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ATP5J2P56134 94 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 CARD18P57730 90 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 POU6F2P78424 691 aaPredicted RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 PLAURQ03405 335 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SLC34A1Q06495 639 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 CBX3Q13185 183 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 DCTN2Q13561 401 aaKnown RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 TAB1Q15750 504 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 PGGHGQ32M88 737 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ARL13AQ5H913 290 aaPredicted RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 SFRP5Q5T4F7 317 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 OLIG3Q7RTU3 272 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SZRD1Q7Z422 152 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 KRTCAP2Q8N6L1 136 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 COX18Q8N8Q8 333 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 BANPQ8N9N5 519 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 MAPK1IP1LQ8NDC0 245 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZFP28Q8NHY6 868 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 PHOSPHO1Q8TCT1 267 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 TMEM171Q8WVE6 324 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 COQ8BQ96D53 544 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 DGCR14Q96DF8 476 aaKnown RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 MAGEB18Q96M61 343 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZNF184Q99676 751 aaPredicted RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 PSD2Q9BQI7 771 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 TRMOQ9BU70 441 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 BCO1Q9HAY6 547 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZCCHC3Q9NUD5 404 aaKnown RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 NPAP1Q9NZP6 1156 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 SLC17A7Q9P2U7 560 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 PRSS50Q9UI38 385 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZDHHC2Q9UIJ5 367 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 ZNF232Q9UNY5 417 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 LAMP3Q9UQV4 416 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 TRAF6Q9Y4K3 522 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 MAGED1Q9Y5V3 778 aaPredicted RBP5.96□□□□□ -1.46
VPS53-213ENST00000572334 ANK2Q01484 3957 aa5.96□□□□□ -1.46
VPS53-213ENST00000572334 GOLGA8QA0A0J9YX86 632 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 GOLGA8OA6NCC3 632 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 SHISA9B4DS77 424 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 GOLGA8NF8WBI6 632 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 SMAD9O15198 467 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 RAMP1O60894 148 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 SCN2BO60939 215 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 TMCC2O75069 709 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 FKBP6O75344 327 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 BCAS1O75363 584 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 CRLF1O75462 422 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 HSPA4LO95757 839 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 C6orf47O95873 294 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 ADAP00813 363 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 YES1P07947 543 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 KRT16P08779 473 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 PABPC4LP0CB38 370 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 CREB1P16220 341 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 COX5AP20674 150 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 CDKN1AP38936 164 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 EIF1P41567 113 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 ASMTP46597 345 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 OR3A2P47893 321 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 PTDSS1P48651 473 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 CCT3P49368 545 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 ATP12AP54707 1039 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 SUMO3P55854 103 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 RAC3P60763 192 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 HBA1P69905 142 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 PHC1P78364 1004 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 KRT72Q14CN4 511 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 RNPS1Q15287 305 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 TMEM176BQ3YBM2 270 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 ZNF672Q499Z4 452 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 LIN52Q52LA3 116 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 C6orf136Q5SQH8 315 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 DCST2Q5T1A1 773 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 DNAJC14Q6Y2X3 702 aaPredicted RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 ZCCHC23Q6ZST2 131 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 FCRLAQ7L513 359 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 ZC3HAV1Q7Z2W4 902 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 R3HCC1LQ7Z5L2 792 aaKnown RBP5.95□□□□□ -1.46
VPS53-213ENST00000572334 LRRC34Q8IZ02 419 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 KIRREL3Q8IZU9 778 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 CLEC4FQ8N1N0 589 aa5.95□□□□□ -1.46
VPS53-213ENST00000572334 ZNF619Q8N2I2 560 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms