RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 ILF3Q12906 894 aaKnown RBP eCLIP21.01■□□□□ 0.95
VPS53-211ENST00000571805 SSX6Q7RTT6 188 aa21.01■□□□□ 0.95
VPS53-211ENST00000571805 SLC44A3Q8N4M1 653 aa21.01■□□□□ 0.95
VPS53-211ENST00000571805 SAMD12Q8N8I0 201 aa21.01■□□□□ 0.95
VPS53-211ENST00000571805 DNAJB12Q9NXW2 375 aaKnown RBP21.01■□□□□ 0.95
VPS53-211ENST00000571805 IGKV1D-16P01601 117 aa21■□□□□ 0.95
VPS53-211ENST00000571805 NPR2P20594 1047 aa21■□□□□ 0.95
VPS53-211ENST00000571805 RAB38P57729 211 aa21■□□□□ 0.95
VPS53-211ENST00000571805 EFR3AQ14156 821 aa21■□□□□ 0.95
VPS53-211ENST00000571805 LINC00114Q6XXX2 140 aa21■□□□□ 0.95
VPS53-211ENST00000571805 Q6ZSR6 202 aa21■□□□□ 0.95
VPS53-211ENST00000571805 OR5J2Q8NH18 312 aa21■□□□□ 0.95
VPS53-211ENST00000571805 TRIM63Q969Q1 353 aa21■□□□□ 0.95
VPS53-211ENST00000571805 SLA2Q9H6Q3 261 aa21■□□□□ 0.95
VPS53-211ENST00000571805 POT1Q9NUX5 634 aa21■□□□□ 0.95
VPS53-211ENST00000571805 SZT2Q5T011 3432 aa21■□□□□ 0.95
VPS53-211ENST00000571805 PAHP00439 452 aa21■□□□□ 0.95
VPS53-211ENST00000571805 ACVR1BP36896 505 aa21■□□□□ 0.95
VPS53-211ENST00000571805 RBM34P42696 430 aaKnown RBP21■□□□□ 0.95
VPS53-211ENST00000571805 TPMTP51580 245 aa21■□□□□ 0.95
VPS53-211ENST00000571805 GPR176Q14439 515 aa21■□□□□ 0.95
VPS53-211ENST00000571805 ZNF614Q8N883 585 aa21■□□□□ 0.95
VPS53-211ENST00000571805 DTX3Q8N9I9 347 aa21■□□□□ 0.95
VPS53-211ENST00000571805 OR4N2Q8NGD1 307 aa21■□□□□ 0.95
VPS53-211ENST00000571805 GPBAR1Q8TDU6 330 aa21■□□□□ 0.95
VPS53-211ENST00000571805 THAP7Q9BT49 309 aaPredicted RBP21■□□□□ 0.95
VPS53-211ENST00000571805 HDHD2Q9H0R4 259 aa21■□□□□ 0.95
VPS53-211ENST00000571805 TCEAL2Q9H3H9 227 aaPredicted RBP21■□□□□ 0.95
VPS53-211ENST00000571805 SERTAD3Q9UJW9 196 aa21■□□□□ 0.95
VPS53-211ENST00000571805 FAM221BA6H8Z2 402 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 CENPBD1B2RD01 187 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 ORC5O43913 435 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 RDH16O75452 317 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 CTSBP07858 339 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 ARSBP15848 533 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 RBMS1P29558 406 aaKnown RBP20.99■□□□□ 0.95
VPS53-211ENST00000571805 RFLNBQ8N5W9 214 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 LSMEM1Q8N8F7 131 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 LMF2Q9BU23 707 aaKnown RBP20.99■□□□□ 0.95
VPS53-211ENST00000571805 ST6GALNAC2Q9UJ37 374 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.99■□□□□ 0.95
VPS53-211ENST00000571805 SLC6A1P30531 599 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 SLC6A6P31641 620 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 TALDO1P37837 337 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 PITPNBP48739 271 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 NRG3P56975 720 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 ACTC1P68032 377 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 ACTA1P68133 377 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 SLC25A35Q3KQZ1 300 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 ACSM3Q53FZ2 586 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 TMEM92Q6UXU6 159 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 TEX19Q8NA77 164 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 GHSRQ92847 366 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 TRIM2Q9C040 744 aa20.99■□□□□ 0.95
VPS53-211ENST00000571805 A0A1B0GVC2 190 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 A6NIN4 97 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 INMT-MINDY4F8WBC2 141 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 GUSBP08236 651 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 PYCR1P32322 319 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 FAPQ12884 760 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 ALG10BQ5I7T1 473 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 GPR135Q8IZ08 494 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 CREB3L1Q96BA8 519 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 FOLH1BQ9HBA9 442 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 FAM60AQ9NP50 221 aa20.98■□□□□ 0.95
VPS53-211ENST00000571805 MYO9BQ13459 2157 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ERP29P30040 261 aaKnown RBP20.97■□□□□ 0.95
VPS53-211ENST00000571805 AKT2P31751 481 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 HCCSP53701 268 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 POU4F2Q12837 409 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ARHGAP11AQ6P4F7 1023 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ARHGEF39Q8N4T4 335 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 OR13H1Q8NG92 308 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 OR9A4Q8NGU2 314 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 RFT1Q96AA3 541 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 CHRNA9Q9UGM1 479 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 SLC9B1P1A6NJY1 282 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 OR10H2O60403 315 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 CAPZA2P47755 286 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 GZMKP49863 264 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ATP12AP54707 1039 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 RRAS2P62070 204 aaPredicted RBP20.97■□□□□ 0.95
VPS53-211ENST00000571805 CRYZQ08257 329 aaKnown RBP20.97■□□□□ 0.95
VPS53-211ENST00000571805 PLA1AQ53H76 456 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ASB18Q6ZVZ8 466 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 SLC22A18ASQ8N1D0 253 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 SLC43A2Q8N370 569 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 OR13C5Q8NGS8 318 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 TRMT10AQ8TBZ6 339 aaKnown RBP20.97■□□□□ 0.95
VPS53-211ENST00000571805 SLC37A2Q8TED4 501 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ABHD1Q96SE0 405 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 S1PR5Q9H228 398 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 ACOXLQ9NUZ1 547 aa20.97■□□□□ 0.95
VPS53-211ENST00000571805 SOX30O94993 753 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 IFNGP01579 166 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 TFP02787 698 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 CELA2BP08218 269 aaPredicted RBP20.96■□□□□ 0.95
VPS53-211ENST00000571805 SHHQ15465 462 aa20.96■□□□□ 0.95
VPS53-211ENST00000571805 ZNF761Q86XN6 746 aaPredicted RBP20.96■□□□□ 0.95
VPS53-211ENST00000571805 ARL14Q8N4G2 192 aa20.96■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms