RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PTGR2Q8N8N7 351 aaPredicted RBP15.59■□□□□ 0.09
CLK3-227ENST00000570296 CDRT4Q8N9R6 151 aa15.59■□□□□ 0.09
CLK3-227ENST00000570296 PIGXQ8TBF5 258 aa15.59■□□□□ 0.09
CLK3-227ENST00000570296 CKAP2Q8WWK9 683 aa15.59■□□□□ 0.09
CLK3-227ENST00000570296 DVL3Q92997 716 aaPredicted RBP15.59■□□□□ 0.09
CLK3-227ENST00000570296 ZHX1-C8orf76Q96EF9 292 aa15.59■□□□□ 0.09
CLK3-227ENST00000570296 NSUN5Q96P11 429 aaKnown RBP15.59■□□□□ 0.09
CLK3-227ENST00000570296 TENM3Q9P273 2699 aa15.59■□□□□ 0.09
CLK3-227ENST00000570296 TMEM129A0AVI4 362 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 FAM159BA6NKW6 160 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 M0QZ24 198 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 KLF11O14901 512 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 WNT9BO14905 357 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 OIP5O43482 229 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 RNASE1P07998 156 aaKnown RBP15.58■□□□□ 0.08
CLK3-227ENST00000570296 ADRA2AP08913 450 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 MPGP29372 298 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 SERPINB4P48594 390 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 TMEM33P57088 247 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 ELFN2Q5R3F8 820 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 ACSM5Q6NUN0 579 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 CASP12Q6UXS9 341 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 ZNF662Q6ZS27 426 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 CYS1Q717R9 158 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 C22orf15Q8WYQ4 148 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 SLC7A10Q9NS82 523 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 PARPBPQ9NWS1 579 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 PDP1Q9P0J1 537 aaPredicted RBP15.58■□□□□ 0.08
CLK3-227ENST00000570296 CARD8Q9Y2G2 431 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 MMP24Q9Y5R2 645 aa15.58■□□□□ 0.08
CLK3-227ENST00000570296 SH3PXD2BA1X283 911 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 H3BNH8 94 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 STX16-NPEPL1H3BU86 382 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 STX16O14662 325 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 OTCP00480 354 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 TIA1P31483 386 aaKnown RBP eCLIP15.57■□□□□ 0.08
CLK3-227ENST00000570296 THBS4P35443 961 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 ACSM2AQ08AH3 577 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 HIKESHIQ53FT3 197 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 ACSM2BQ68CK6 577 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 LETMD1Q6P1Q0 360 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 KLC3Q6P597 504 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 ANKRD16Q6P6B7 361 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 CDK20Q8IZL9 346 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 DUX5Q96PT3 197 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 CCT8L2Q96SF2 557 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 TPK1Q9H3S4 243 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 MIEF1Q9NQG6 463 aa15.57■□□□□ 0.08
CLK3-227ENST00000570296 CRNNQ9UBG3 495 aaPredicted RBP15.57■□□□□ 0.08
CLK3-227ENST00000570296 TCRBV9S1A1TA0A576 114 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 MPZL1O95297 269 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 ACP2P11117 423 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 MDKP21741 143 aaPredicted RBP15.56■□□□□ 0.08
CLK3-227ENST00000570296 SSTR1P30872 391 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 CALCRP30988 508 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 ZNF311Q5JNZ3 666 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 DCAF12L2Q5VW00 463 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 RDH5Q92781 318 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 SLC25A28Q96A46 364 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 ZNF524Q96C55 264 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 PHF21BQ96EK2 531 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 MOV10Q9HCE1 1003 aaKnown RBP15.56■□□□□ 0.08
CLK3-227ENST00000570296 RNF14Q9UBS8 474 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 TMCO1Q9UM00 188 aa15.56■□□□□ 0.08
CLK3-227ENST00000570296 CLDN34H7C241 214 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 DNPH1O43598 174 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 PLPP2O43688 288 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 SEC31AO94979 1220 aaKnown RBP15.55■□□□□ 0.08
CLK3-227ENST00000570296 KLHL2O95198 593 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 ANXA4P09525 319 aaPredicted RBP15.55■□□□□ 0.08
CLK3-227ENST00000570296 CECR9P0C854 216 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 GATA3P23771 443 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 MRPS11P82912 194 aaKnown RBP15.55■□□□□ 0.08
CLK3-227ENST00000570296 HGFACQ04756 655 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 C2orf80Q0P641 193 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 QPRTQ15274 297 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 TIGD2Q4W5G0 525 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 KLHL26Q53HC5 615 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 SYT14P1Q58G82 188 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 REP15Q6BDI9 236 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 C1QL4Q86Z23 238 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 CTAGE3PQ8IX95 158 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 RIBC1Q8N443 379 aaPredicted RBP15.55■□□□□ 0.08
CLK3-227ENST00000570296 OR5W2Q8NH69 310 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 ACTRT1Q8TDG2 376 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 PYROXD1Q8WU10 500 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 SLC25A43Q8WUT9 341 aaPredicted RBP15.55■□□□□ 0.08
CLK3-227ENST00000570296 C1orf147Q96MC9 270 aaPredicted RBP15.55■□□□□ 0.08
CLK3-227ENST00000570296 GPR78Q96P69 363 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 GPA33Q99795 319 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 EBPLQ9BY08 206 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 ZNF665Q9H7R5 613 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 SERINC1Q9NRX5 453 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 SLC9A8Q9Y2E8 581 aa15.55■□□□□ 0.08
CLK3-227ENST00000570296 GTPBP1O00178 669 aaKnown RBP15.54■□□□□ 0.08
CLK3-227ENST00000570296 MANBAO00462 879 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 TP73O15350 636 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 IGLV1-44P01699 117 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 KRT6AP02538 564 aa15.54■□□□□ 0.08
CLK3-227ENST00000570296 KRT6BP04259 564 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms