RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FNDC9Q8TBE3 224 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 LRRC58Q96CX6 371 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 ZHX1-C8orf76Q96EF9 292 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 ZNF845Q96IR2 970 aaPredicted RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 ADGRG7Q96K78 797 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 NPAS1Q99742 590 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 ECSITQ9BQ95 431 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 KAT8Q9H7Z6 458 aaKnown RBP11.67□□□□□ -0.54
CLK3-224ENST00000568605 GLRX2Q9NS18 164 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 ARMCX1Q9P291 453 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 CHRNA9Q9UGM1 479 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 AP3M1Q9Y2T2 418 aa11.67□□□□□ -0.54
CLK3-224ENST00000568605 A0A0J9YW62 118 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 LOC100653049A0A140TA62 436 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 H0YC42 278 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 AP3D1O14617 1153 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CXCL13O43927 109 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 BCAS1O75363 584 aaPredicted RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 KRT34O76011 436 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 TGM6O95932 706 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CD1EP15812 388 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 COL8A1P27658 744 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 GRNP28799 593 aaKnown RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 SLC1A3P43003 542 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CPA2P48052 419 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 TPD52P55327 224 aaPredicted RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 CTBP2P56545 445 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CARD18P57730 90 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CSNK2A1P68400 391 aaPredicted RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 PLAURQ03405 335 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 TMEM176BQ3YBM2 270 aaPredicted RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 SYT14P1Q58G82 188 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 SP5Q6BEB4 398 aaPredicted RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 WBP2NLQ6ICG8 309 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 NANOGP8Q6NSW7 305 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 ERICH5Q6P6B1 374 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 NET1Q7Z628 596 aaPredicted RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 PATL1Q86TB9 770 aaKnown RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 MTDHQ86UE4 582 aaKnown RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 ARMC8Q8IUR7 673 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 C10orf111Q8N326 155 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CNEP1R1Q8N9A8 125 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 ATP6V1C2Q8NEY4 427 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 OR10A6Q8NH74 314 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 RASSF5Q8WWW0 418 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 FIG4Q92562 907 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 DDIT4LQ96D03 193 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 RCN3Q96D15 328 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 KLHDC3Q9BQ90 382 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 SLC39A3Q9BRY0 314 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 TACO1Q9BSH4 297 aaKnown RBP11.66□□□□□ -0.54
CLK3-224ENST00000568605 CCDC106Q9BWC9 280 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 UCK2Q9BZX2 261 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 NANOGQ9H9S0 305 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 RNF122Q9H9V4 155 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 PACSIN3Q9UKS6 424 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 EMC9Q9Y3B6 208 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 CENPEQ02224 2701 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 FREM1Q5H8C1 2179 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 UNC79Q9P2D8 2635 aa11.66□□□□□ -0.54
CLK3-224ENST00000568605 TMED7-TICAM2A0A0A6YYA0 188 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 A0A1W2PNV4 684 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 FXYD1O00168 92 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 DCTN3O75935 186 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 OPN1LWP04000 364 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 GKN3PP0CG01 181 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 TFPIP10646 304 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 COX4I1P13073 169 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 IL11P20809 199 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 DRD4P21917 467 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 AQP1P29972 269 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 UQCRC1P31930 480 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 PCGF2P35227 344 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 CLK1P49759 484 aaKnown RBP11.65□□□□□ -0.54
CLK3-224ENST00000568605 GYS2P54840 703 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 TFF3Q07654 80 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 SELPLGQ14242 412 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 RNPS1Q15287 305 aaKnown RBP11.65□□□□□ -0.54
CLK3-224ENST00000568605 ZNF239Q16600 458 aaKnown RBP11.65□□□□□ -0.54
CLK3-224ENST00000568605 FBXL19-AS1Q494R0 122 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 DHRS4L2Q6PKH6 230 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 MEX3BQ6ZN04 569 aaKnown RBP11.65□□□□□ -0.54
CLK3-224ENST00000568605 KIF18BQ86Y91 864 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 LIX1LQ8IVB5 337 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 CADM2Q8N3J6 435 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 POU5F2Q8N7G0 328 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 SLC26A7Q8TE54 656 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 RNASE6Q93091 150 aaKnown RBP11.65□□□□□ -0.54
CLK3-224ENST00000568605 MARVELD3Q96A59 401 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 CMTM5Q96DZ9 223 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 GMPPAQ96IJ6 420 aaPredicted RBP11.65□□□□□ -0.54
CLK3-224ENST00000568605 OR5B2Q96R09 309 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 SPOCK3Q9BQ16 436 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 TRIM8Q9BZR9 551 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 COQ10BQ9H8M1 238 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 EFCAB1Q9HAE3 211 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 FANCFQ9NPI8 374 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 CTPS2Q9NRF8 586 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 RLIMQ9NVW2 624 aa11.65□□□□□ -0.54
CLK3-224ENST00000568605 RPS6KB2Q9UBS0 482 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms