RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 GMPPAQ96IJ6 420 aaPredicted RBP13.43□□□□□ -0.26
VPS39-210ENST00000568357 SIKE1Q9BRV8 207 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 RABEP2Q9H5N1 569 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 IKZF5Q9H5V7 419 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 TIGARQ9NQ88 270 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 CTPS2Q9NRF8 586 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 PLSCR4Q9NRQ2 329 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 THUMPD1Q9NXG2 353 aaKnown RBP13.43□□□□□ -0.26
VPS39-210ENST00000568357 CALML5Q9NZT1 146 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 CHST2Q9Y4C5 530 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 SPG11Q96JI7 2443 aa13.43□□□□□ -0.26
VPS39-210ENST00000568357 MED12LQ86YW9 2145 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 A0A0G2JPF8 293 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 HNRNPCL2B2RXH8 293 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 HNRNPCL3B7ZW38 293 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 HNRNPCL1O60812 293 aaKnown RBP13.42□□□□□ -0.26
VPS39-210ENST00000568357 PLGP00747 810 aaPredicted RBP13.42□□□□□ -0.26
VPS39-210ENST00000568357 HNRNPCL4P0DMR1 293 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 EPXP11678 715 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 KLK2P20151 261 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 APOBEC1P41238 236 aaKnown RBP13.42□□□□□ -0.26
VPS39-210ENST00000568357 GUCY1A3Q02108 690 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 SF3A3Q12874 501 aaKnown RBP eCLIP13.42□□□□□ -0.26
VPS39-210ENST00000568357 FADDQ13158 208 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 GNA13Q14344 377 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 DAZAP2Q15038 168 aaPredicted RBP13.42□□□□□ -0.26
VPS39-210ENST00000568357 METTL21CQ5VZV1 264 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 CGB2Q6NT52 195 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 ZNF836Q6ZNA1 936 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 TMEM200AQ86VY9 491 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 CLIP4Q8N3C7 705 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 RNF128Q8TEB7 428 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 ABHD3Q8WU67 409 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 CPNE4Q96A23 557 aaPredicted RBP13.42□□□□□ -0.26
VPS39-210ENST00000568357 TMEM120AQ9BXJ8 343 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 RSPO3Q9BXY4 272 aaPredicted RBP13.42□□□□□ -0.26
VPS39-210ENST00000568357 RAD21L1Q9H4I0 556 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 BCL2L10Q9HD36 194 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 A4GALTQ9NPC4 353 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 SERINC1Q9NRX5 453 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 GLRX2Q9NS18 164 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 FGFR1OP2Q9NVK5 253 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 PROCRQ9UNN8 238 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 TRIM33Q9UPN9 1127 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 GMEB1Q9Y692 573 aa13.42□□□□□ -0.26
VPS39-210ENST00000568357 ANKHD1Q8IWZ3 2542 aaKnown RBP13.41□□□□□ -0.26
VPS39-210ENST00000568357 UQCRHLA0A096LP55 91 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 IGHV3-15A0A0B4J1V0 119 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 CDHR4A6H8M9 788 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 CFAP73A6NFT4 308 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 A6NNC1 897 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 GKN3PP0CG01 181 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 SLC7A1P30825 629 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 CD79BP40259 229 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 CTBP2P56545 445 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 RAC3P60763 192 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 EPS8Q12929 822 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 GTF2IRD2BQ6EKJ0 949 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 C3orf33Q6P1S2 294 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 TMPPEQ6ZT21 453 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 FCRLAQ7L513 359 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 GRINAQ7Z429 371 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 GTF2IRD2Q86UP8 949 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 RETREG3Q86VR2 466 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 OR6K3Q8NGY3 331 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 REXO5Q96IC2 774 aaKnown RBP13.41□□□□□ -0.26
VPS39-210ENST00000568357 OR5B2Q96R09 309 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 GPATCH1Q9BRR8 931 aaKnown RBP13.41□□□□□ -0.26
VPS39-210ENST00000568357 RASSF1Q9NS23 344 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 ELOVL5Q9NYP7 299 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 ZNF443Q9Y2A4 671 aaPredicted RBP13.41□□□□□ -0.26
VPS39-210ENST00000568357 NDUFAF1Q9Y375 327 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 EMC9Q9Y3B6 208 aa13.41□□□□□ -0.26
VPS39-210ENST00000568357 TMEM247A6NEH6 219 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 FAAHO00519 579 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 PRKD3O94806 890 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 PGM3O95394 542 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 PABPC4LP0CB38 370 aaKnown RBP13.4□□□□□ -0.26
VPS39-210ENST00000568357 GPX2P18283 190 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 CCNA2P20248 432 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 AGTR1P30556 359 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 ACAA2P42765 397 aaKnown RBP13.4□□□□□ -0.26
VPS39-210ENST00000568357 PCYT1AP49585 367 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 DIO1P49895 249 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 LIN52Q52LA3 116 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 HSP90B2PQ58FF3 399 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 SYT14P1Q58G82 188 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 RUNDC3AQ59EK9 446 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 TUSC5Q8IXB3 177 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 NRGNQ92686 78 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 ARL5BQ96KC2 179 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 DACH2Q96NX9 599 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 WFIKKN1Q96NZ8 548 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 SLC39A3Q9BRY0 314 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 OR11A1Q9GZK7 315 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 CHRNA9Q9UGM1 479 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 OSGIN1Q9UJX0 560 aa13.4□□□□□ -0.26
VPS39-210ENST00000568357 ING1Q9UK53 422 aaPredicted RBP13.4□□□□□ -0.26
VPS39-210ENST00000568357 HEATR5AQ86XA9 2040 aa13.39□□□□□ -0.27
VPS39-210ENST00000568357 TMED7-TICAM2A0A0A6YYA0 188 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 61.5 ms