RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 SAXO2Q658L1 398 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 TNFAIP8L2Q6P589 184 aaPredicted RBP14.24□□□□□ -0.13
CLN3-229ENST00000567963 FAM71CQ8NEG0 241 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 RAB8BQ92930 207 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 ZG16BQ96DA0 208 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 POLE3Q9NRF9 147 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 SLC35A3Q9Y2D2 325 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 WDR45Q9Y484 360 aa14.24□□□□□ -0.13
CLN3-229ENST00000567963 DPRXA6NFQ7 191 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 SULT2B1O00204 365 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 TM9SF1O15321 606 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 BCAS1O75363 584 aaPredicted RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 LYZL6O75951 148 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 SOD3P08294 240 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 APOBEC1P41238 236 aaKnown RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 CSNK2A1P68400 391 aaPredicted RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 BSPH1Q075Z2 132 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 FUT5Q11128 374 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 ZNF672Q499Z4 452 aaPredicted RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 DNAJC14Q6Y2X3 702 aaPredicted RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 GALNT5Q7Z7M9 940 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 MTDHQ86UE4 582 aaKnown RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 LRRC34Q8IZ02 419 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 SMAP2Q8WU79 429 aaPredicted RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 SLC25A43Q8WUT9 341 aaPredicted RBP14.23□□□□□ -0.13
CLN3-229ENST00000567963 NEUROG1Q92886 237 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 ROPN1LQ96C74 230 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 NEURL3Q96EH8 262 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 CCDC106Q9BWC9 280 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 HAO1Q9UJM8 370 aa14.23□□□□□ -0.13
CLN3-229ENST00000567963 CSPG4Q6UVK1 2322 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 FESP07332 822 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 LBPP18428 481 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 IGHV1-2P23083 117 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 PCSK6P29122 969 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 KCNJ10P78508 379 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 TNK1Q13470 666 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 DPY19L1Q2PZI1 675 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 SPANXN4Q5MJ08 99 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 FRRS1Q6ZNA5 592 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.22□□□□□ -0.13
CLN3-229ENST00000567963 ZNF100Q8IYN0 542 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 KIRREL3Q8IZU9 778 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 ZNF563Q8TA94 476 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 TRMT61AQ96FX7 289 aaKnown RBP14.22□□□□□ -0.13
CLN3-229ENST00000567963 NUF2Q9BZD4 464 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 TRIM2Q9C040 744 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 CTPS2Q9NRF8 586 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 CHRNA9Q9UGM1 479 aa14.22□□□□□ -0.13
CLN3-229ENST00000567963 TLN2Q9Y4G6 2542 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 IGKV3D-15A0A087WSY6 115 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 PRAMEF27A3QJZ7 478 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 PGM3O95394 542 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 COX5AP20674 150 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 BGNP21810 368 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 FKBP2P26885 142 aaKnown RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 RYKP34925 604 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 CHI3L1P36222 383 aaPredicted RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 CLNS1AP54105 237 aaKnown RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 MPP2Q14168 576 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 PDK3Q15120 406 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 PPA1Q15181 289 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 STK11Q15831 433 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 PGGHGQ32M88 737 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 FAM174BQ3ZCQ3 159 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 TIMM23BQ5SRD1 257 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 ABLIM2Q6H8Q1 611 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 PRIMA1Q86XR5 153 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 KBTBD8Q8NFY9 601 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 MUCL1Q96DR8 90 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 ARL5BQ96KC2 179 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 SLC35A5Q9BS91 424 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 MEAF6Q9HAF1 191 aa14.21□□□□□ -0.13
CLN3-229ENST00000567963 EXOSC3Q9NQT5 275 aaKnown RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 MARCOQ9UEW3 520 aaPredicted RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.21□□□□□ -0.13
CLN3-229ENST00000567963 MAGED1Q9Y5V3 778 aaPredicted RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 SPIN1Q9Y657 262 aaPredicted RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 V9GYY5 206 aaPredicted RBP14.21□□□□□ -0.13
CLN3-229ENST00000567963 HIVEP2P31629 2446 aa14.21□□□□□ -0.14
CLN3-229ENST00000567963 CADP27708 2225 aa14.21□□□□□ -0.14
CLN3-229ENST00000567963 CLDN24A6NM45 220 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 ZNF716A6NP11 495 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 INAFM1C9JVW0 142 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 E9PBE3 544 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 HMGN4O00479 90 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 RAMP1O60894 148 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 ADAM11O75078 769 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 PMS2P2O95744 297 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 C1QCP02747 245 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 TFPIP10646 304 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 GGT1P19440 569 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 S100A3P33764 101 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 KHKP50053 298 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 PPP2R2BQ00005 443 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 PLAURQ03405 335 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 CHRNEQ04844 493 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 STX3Q13277 289 aa14.2□□□□□ -0.14
CLN3-229ENST00000567963 ETFDHQ16134 617 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms