RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 CMPK2Q5EBM0 449 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 ISLR2Q6UXK2 745 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 PARP8Q8N3A8 854 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 WDSUB1Q8N9V3 476 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 OR4K17Q8NGC6 315 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 NTNG2Q96CW9 530 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 GPA33Q99795 319 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 C12orf10Q9HB07 376 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 PLA2G3Q9NZ20 509 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 CNTRLQ7Z7A1 2325 aa27.8■■■□□ 2.04
CTCF-203ENST00000566078 H0YAE9 185 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 DENRO43583 198 aaKnown RBP27.79■■■□□ 2.04
CTCF-203ENST00000566078 MASP1P48740 699 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 CCL11P51671 97 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 ALDH6A1Q02252 535 aaKnown RBP27.79■■■□□ 2.04
CTCF-203ENST00000566078 P3H2Q8IVL5 708 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 FADS6Q8N9I5 356 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 TMEM234Q8WY98 164 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 CNBD2Q96M20 576 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 TIMMDC1Q9NPL8 285 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 FBXL2Q9UKC9 423 aa27.79■■■□□ 2.04
CTCF-203ENST00000566078 IFI30P13284 250 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 ZNF41P51814 821 aaPredicted RBP27.78■■■□□ 2.04
CTCF-203ENST00000566078 PRKCDQ05655 676 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 NPRL3Q12980 569 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 MED21Q13503 144 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 ARSKQ6UWY0 536 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 CHERPQ8IWX8 916 aaKnown RBP27.78■■■□□ 2.04
CTCF-203ENST00000566078 ST8SIA1Q92185 356 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 MEPEQ9NQ76 525 aaPredicted RBP27.78■■■□□ 2.04
CTCF-203ENST00000566078 C20orf141Q9NUB4 165 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 ENOPH1Q9UHY7 261 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 OSGIN1Q9UJX0 560 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 VDAC3Q9Y277 283 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 A0A0G2JMM0 328 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 A0A1W2PPB8 328 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 A0A1W2PRS3 328 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 KIR3DP1A8MWS1 328 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 SNPHO15079 494 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 SNX4O95219 450 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 GSSP48637 474 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 TTC23Q5W5X9 447 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 SPINK14Q6IE38 97 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 POMZP3Q6PJE2 187 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 GRINAQ7Z429 371 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 PLCZ1Q86YW0 608 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 TMEM41AQ96HV5 264 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 SIGLEC12Q96PQ1 595 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 ANKRD60Q9BZ19 345 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 MED17Q9NVC6 651 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 REV1Q9UBZ9 1251 aa27.78■■■□□ 2.04
CTCF-203ENST00000566078 FREM3P0C091 2139 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 NEURL1O76050 574 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 CLIC3O95833 236 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 GNAO1P09471 354 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 PRKCAP17252 672 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 GSTM3P21266 225 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 FPR3P25089 353 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 PLA2G5P39877 138 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 DNASE1L1P49184 302 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 POLR2HP52434 150 aaKnown RBP27.77■■■□□ 2.04
CTCF-203ENST00000566078 TSPAN31Q12999 210 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 OR1C1Q15619 314 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 CD300LDQ6UXZ3 194 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 JSRP1Q96MG2 331 aaPredicted RBP27.77■■■□□ 2.04
CTCF-203ENST00000566078 ZNF570Q96NI8 536 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 GRIP2Q9C0E4 1043 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 TMEM5Q9Y2B1 443 aa27.77■■■□□ 2.04
CTCF-203ENST00000566078 APC2O95996 2303 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 LOC100130705A0A1B0GUX0 176 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 KLF4O43474 513 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 WISP1O95388 367 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 OSMP13725 252 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 CXCR1P25024 350 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 EPHA2P29317 976 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 CTBP2P56545 445 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 CRYZQ08257 329 aaKnown RBP27.76■■■□□ 2.03
CTCF-203ENST00000566078 COX10Q12887 443 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 MFAP5Q13361 173 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 OR1J4Q8NGS1 313 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 BPIFA2Q96DR5 249 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 CCDC86Q9H6F5 360 aaKnown RBP27.76■■■□□ 2.03
CTCF-203ENST00000566078 ZNF552Q9H707 407 aaPredicted RBP27.76■■■□□ 2.03
CTCF-203ENST00000566078 PTGES2Q9H7Z7 377 aa27.76■■■□□ 2.03
CTCF-203ENST00000566078 IGKV1D-42A0A075B6H8 117 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 TNFSF12-TNFSF13A0A0A6YY99 330 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 BCKDKO14874 412 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 SLC16A6O15403 523 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 SOX14O95416 240 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 CCNA2P20248 432 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 HTR3AP46098 478 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 CDK20Q8IZL9 346 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 C1GALT1C1Q96EU7 318 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 TMEM43Q9BTV4 400 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 DKK4Q9UBT3 224 aa27.75■■■□□ 2.03
CTCF-203ENST00000566078 ENO4A6NNW6 628 aa27.74■■■□□ 2.03
CTCF-203ENST00000566078 FAM47E-STBD1D6RA91 191 aa27.74■■■□□ 2.03
CTCF-203ENST00000566078 TRIM3O75382 744 aaPredicted RBP27.74■■■□□ 2.03
CTCF-203ENST00000566078 SLC25A12O75746 678 aa27.74■■■□□ 2.03
CTCF-203ENST00000566078 MAKP20794 623 aa27.74■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms