RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ACKR1Q16570 336 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 GSTA3Q16772 222 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 AGBL2Q5U5Z8 902 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 EPGNQ6UW88 154 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 SEZ6L2Q6UXD5 910 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ZNF621Q6ZSS3 439 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 TRIML2Q8N7C3 387 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 WFDC11Q8NEX6 87 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 TMEM234Q8WY98 164 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 CNOT9Q92600 299 aaKnown RBP13.21□□□□□ -0.29
CLN3-213ENST00000565047 PMM1Q92871 262 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ZC3HAV1LQ96H79 300 aaKnown RBP13.21□□□□□ -0.29
CLN3-213ENST00000565047 PIP5K1AQ99755 562 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 TMEM204Q9BSN7 226 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ACTR6Q9GZN1 396 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 CTPS2Q9NRF8 586 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 NKIRAS1Q9NYS0 192 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ZIM2Q9NZV7 527 aa13.21□□□□□ -0.29
CLN3-213ENST00000565047 ACANP16112 2415 aa13.21□□□□□ -0.3
CLN3-213ENST00000565047 FREM1Q5H8C1 2179 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 PRR14LQ5THK1 2151 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.2□□□□□ -0.3
CLN3-213ENST00000565047 FAAHO00519 579 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 TFPTP0C1Z6 253 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 NTF4P34130 210 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 APOBEC1P41238 236 aaKnown RBP13.2□□□□□ -0.3
CLN3-213ENST00000565047 MAGEA8P43361 318 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 DIO1P49895 249 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 MERTKQ12866 999 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 GPAT3Q53EU6 434 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 SYT14P1Q58G82 188 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 TMEM201Q5SNT2 666 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 SFRP5Q5T4F7 317 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 ABLIM2Q6H8Q1 611 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 CMIPQ8IY22 773 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 OR9I1Q8NGQ6 314 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 VPS33AQ96AX1 596 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 ARL5BQ96KC2 179 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 OR5B2Q96R09 309 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 MTHFD2LQ9H903 347 aaPredicted RBP13.2□□□□□ -0.3
CLN3-213ENST00000565047 SLC52A3Q9NQ40 469 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.2□□□□□ -0.3
CLN3-213ENST00000565047 CHST2Q9Y4C5 530 aa13.2□□□□□ -0.3
CLN3-213ENST00000565047 IGKV3D-15A0A087WSY6 115 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 ZNF724A8MTY0 619 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 RFXANKO14593 260 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 AP3D1O14617 1153 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 PLAUP00749 431 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 SLC7A1P30825 629 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 OR3A2P47893 321 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 H3F3AP84243 136 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 PDK3Q15120 406 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 TSC22D1Q15714 1073 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 GTDC1Q4AE62 458 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 BEX5Q5H9J7 111 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 NXNQ6DKJ4 435 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 MSANTD1Q6ZTZ1 278 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 GRINAQ7Z429 371 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 MTDHQ86UE4 582 aaKnown RBP13.19□□□□□ -0.3
CLN3-213ENST00000565047 STK32CQ86UX6 486 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 FUNDC1Q8IVP5 155 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 PNPT1Q8TCS8 783 aaKnown RBP13.19□□□□□ -0.3
CLN3-213ENST00000565047 SLC25A43Q8WUT9 341 aaPredicted RBP13.19□□□□□ -0.3
CLN3-213ENST00000565047 GTF2H4Q92759 462 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 S100PBPQ96BU1 408 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 REXO5Q96IC2 774 aaKnown RBP13.19□□□□□ -0.3
CLN3-213ENST00000565047 C7orf26Q96N11 449 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 ZNF300Q96RE9 604 aaPredicted RBP13.19□□□□□ -0.3
CLN3-213ENST00000565047 ZBTB18Q99592 522 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 HDHD5Q9BXW7 423 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 RSPO3Q9BXY4 272 aaPredicted RBP13.19□□□□□ -0.3
CLN3-213ENST00000565047 ADAM19Q9H013 955 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 SLCO1B3Q9NPD5 702 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 SERINC1Q9NRX5 453 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 KLHL9Q9P2J3 617 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 CHRNA9Q9UGM1 479 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 USH1CQ9Y6N9 552 aa13.19□□□□□ -0.3
CLN3-213ENST00000565047 ZNF716A6NP11 495 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 UBDO15205 165 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 KRT75O95678 551 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 ETFAP13804 333 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 FOSL1P15407 271 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 RYKP34925 604 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 ACAA2P42765 397 aaKnown RBP13.18□□□□□ -0.3
CLN3-213ENST00000565047 IDH2P48735 452 aaKnown RBP13.18□□□□□ -0.3
CLN3-213ENST00000565047 CLK1P49759 484 aaKnown RBP13.18□□□□□ -0.3
CLN3-213ENST00000565047 RASGEF1BQ0VAM2 473 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 P2RY6Q15077 328 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 TTMPQ5BVD1 217 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 LRRC75A-AS1Q8N1F1 130 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 ARFGAP2Q8N6H7 521 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 LILRB1Q8NHL6 650 aaPredicted RBP13.18□□□□□ -0.3
CLN3-213ENST00000565047 SLC38A5Q8WUX1 472 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 TACO1Q9BSH4 297 aaKnown RBP13.18□□□□□ -0.3
CLN3-213ENST00000565047 PAIP1Q9H074 479 aaKnown RBP13.18□□□□□ -0.3
CLN3-213ENST00000565047 TPT1P8Q9HAU6 139 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 PRSS50Q9UI38 385 aa13.18□□□□□ -0.3
CLN3-213ENST00000565047 FLNAP21333 2647 aaKnown RBP13.17□□□□□ -0.3
CLN3-213ENST00000565047 CDHR4A6H8M9 788 aa13.17□□□□□ -0.3
CLN3-213ENST00000565047 SULT2B1O00204 365 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms