RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 CIDECQ96AQ7 238 aaPredicted RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 DNAJA3Q96EY1 480 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 C16orf58Q96GQ5 468 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF382Q96SR6 550 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 BTBD2Q9BX70 525 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 C1QTNF3Q9BXJ4 246 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 HOXD1Q9GZZ0 328 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 SAP130Q9H0E3 1048 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 QRSL1Q9H0R6 528 aaKnown RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF696Q9H7X3 374 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 LPAR2Q9HBW0 351 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 CA10Q9NS85 328 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 HIF1ANQ9NWT6 349 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 SIRT5Q9NXA8 310 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 GRHL1Q9NZI5 618 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 WBP11Q9Y2W2 641 aaKnown RBP6.38□□□□□ -1.39
VPS4A-203ENST00000564399 GRIP1Q9Y3R0 1128 aa6.38□□□□□ -1.39
VPS4A-203ENST00000564399 ARHGAP32A7KAX9 2087 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 GIMAP1-GIMAP5A0A087WTJ2 511 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SH3PXD2BA1X283 911 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 FAM187AA6NFU0 413 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 VSTM5A8MXK1 200 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF264O43296 627 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 PDE5AO76074 875 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 CRYAAP02489 173 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ENO1P06733 434 aaKnown RBP6.37□□□□□ -1.39
VPS4A-203ENST00000564399 TAC1P20366 129 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 EPHA1P21709 976 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 NTF4P34130 210 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SLC1A3P43003 542 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 GUCY2DQ02846 1103 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 MERTKQ12866 999 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 CBFBQ13951 182 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ADIPOQQ15848 244 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 PDCD2Q16342 344 aaPredicted RBP6.37□□□□□ -1.39
VPS4A-203ENST00000564399 KLHL26Q53HC5 615 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 UNC50Q53HI1 259 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SYT14P1Q58G82 188 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SLC25A53Q5H9E4 307 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ANKRD26P1Q6NSI1 321 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 CDC73Q6P1J9 531 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 FAHD2BQ6P2I3 314 aaPredicted RBP6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ZCCHC12Q6PEW1 402 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 TREML4Q6UXN2 200 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 USP43Q70EL4 1123 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 CCDC103Q8IW40 242 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ZCCHC24Q8N2G6 241 aaKnown RBP6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF786Q8N393 782 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 C1orf162Q8NEQ5 155 aaPredicted RBP6.37□□□□□ -1.39
VPS4A-203ENST00000564399 OR5W2Q8NH69 310 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 PIGXQ8TBF5 258 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 FBXO25Q8TCJ0 367 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 UBASH3BQ8TF42 649 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 CDS1Q92903 461 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 TMEM186Q96B77 213 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF524Q96C55 264 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 GIMAP5Q96F15 307 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 FAHD2AQ96GK7 314 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 EGLN2Q96KS0 407 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 KCNA7Q96RP8 456 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF747Q9BV97 191 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 PLK3Q9H4B4 646 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 NARFLQ9H6Q4 476 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 DYNLRB1Q9NP97 96 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SLC7A10Q9NS82 523 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 PARPBPQ9NWS1 579 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SH3BP4Q9P0V3 963 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 DCTN4Q9UJW0 460 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 FBXO9Q9UK97 447 aaPredicted RBP6.37□□□□□ -1.39
VPS4A-203ENST00000564399 USP22Q9UPT9 525 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 STK38LQ9Y2H1 464 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SPEF1Q9Y4P9 236 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 SAR1BQ9Y6B6 198 aa6.37□□□□□ -1.39
VPS4A-203ENST00000564399 IGHV1-18A0A0C4DH31 117 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ZNF716A6NP11 495 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 LYNX1G3V0Z9 82 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 hCG_2039718K7EN88 272 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 PDLIM1O00151 329 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ZSCAN12O43309 604 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 RAD51CO43502 376 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 AKAP10O43572 662 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 EIF4E2O60573 245 aaKnown RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SKAP2O75563 359 aaPredicted RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 HMGN2P05204 90 aaKnown RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 INHBAP08476 426 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SBK3P0C264 359 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 LYNX1P0DP58 116 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 UBL4AP11441 157 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 EFNA1P20827 205 aaPredicted RBP6.36□□□□□ -1.39
VPS4A-203ENST00000564399 PHBP35232 272 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 MAGEA8P43361 318 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 ATP12AP54707 1039 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 PKNOX1P55347 436 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 SESN3P58005 492 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 IL1RL1Q01638 556 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 CAV1Q03135 178 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 FOXL1Q12952 345 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 LCP2Q13094 533 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 RIN1Q13671 783 aa6.36□□□□□ -1.39
VPS4A-203ENST00000564399 LASP1Q14847 261 aaKnown RBP6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms