RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RASGEF1BQ0VAM2 473 aa15□□□□□ -0.01
CLK3-210ENST00000563112 SYT14P1Q58G82 188 aa15□□□□□ -0.01
CLK3-210ENST00000563112 BEX5Q5H9J7 111 aa15□□□□□ -0.01
CLK3-210ENST00000563112 TMPPEQ6ZT21 453 aa15□□□□□ -0.01
CLK3-210ENST00000563112 NUFIP2Q7Z417 695 aaKnown RBP15□□□□□ -0.01
CLK3-210ENST00000563112 GRINAQ7Z429 371 aa15□□□□□ -0.01
CLK3-210ENST00000563112 HMGN2P46Q86SG4 172 aa15□□□□□ -0.01
CLK3-210ENST00000563112 MIER2Q8N344 545 aa15□□□□□ -0.01
CLK3-210ENST00000563112 PNPT1Q8TCS8 783 aaKnown RBP15□□□□□ -0.01
CLK3-210ENST00000563112 LRRC8CQ8TDW0 803 aa15□□□□□ -0.01
CLK3-210ENST00000563112 ZHX1-C8orf76Q96EF9 292 aa15□□□□□ -0.01
CLK3-210ENST00000563112 ITCHQ96J02 903 aa15□□□□□ -0.01
CLK3-210ENST00000563112 OR52B2Q96RD2 323 aa15□□□□□ -0.01
CLK3-210ENST00000563112 TMUB1Q9BVT8 246 aa15□□□□□ -0.01
CLK3-210ENST00000563112 ACTR6Q9GZN1 396 aa15□□□□□ -0.01
CLK3-210ENST00000563112 SLC38A1Q9H2H9 487 aa15□□□□□ -0.01
CLK3-210ENST00000563112 SDR39U1Q9NRG7 319 aaPredicted RBP15□□□□□ -0.01
CLK3-210ENST00000563112 USH1CQ9Y6N9 552 aa15□□□□□ -0.01
CLK3-210ENST00000563112 FLNAP21333 2647 aaKnown RBP15□□□□□ -0.01
CLK3-210ENST00000563112 AGAP5A6NIR3 686 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 SIAH2O43255 324 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 C1QCP02747 245 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 DBIP07108 87 aaKnown RBP14.99□□□□□ -0.01
CLK3-210ENST00000563112 ZCCHC18P0CG32 403 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 UQCRBP14927 111 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CRATP43155 626 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CLK1P49759 484 aaKnown RBP14.99□□□□□ -0.01
CLK3-210ENST00000563112 DIO1P49895 249 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 POLR2JP52435 117 aaKnown RBP14.99□□□□□ -0.01
CLK3-210ENST00000563112 STX1BP61266 288 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 COX20Q5RI15 118 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 EPGNQ6UW88 154 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 TFAP2EQ6VUC0 442 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 DNAJC14Q6Y2X3 702 aaPredicted RBP14.99□□□□□ -0.01
CLK3-210ENST00000563112 C22orf34Q6ZV56 151 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 MAVSQ7Z434 540 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 WFDC8Q8IUA0 241 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 PEX5LQ8IYB4 626 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 WDR60Q8WVS4 1066 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CNOT9Q92600 299 aaKnown RBP14.99□□□□□ -0.01
CLK3-210ENST00000563112 PIGTQ969N2 578 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 C7orf26Q96N11 449 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CCDC106Q9BWC9 280 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 UBTD1Q9HAC8 227 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 BCO1Q9HAY6 547 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CTPS2Q9NRF8 586 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CALML5Q9NZT1 146 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 CHRNA9Q9UGM1 479 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 ACANP16112 2415 aa14.99□□□□□ -0.01
CLK3-210ENST00000563112 TMEM247A6NEH6 219 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 CLDN24A6NM45 220 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 SMAD9O15198 467 aaKnown RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 POLR3GO15318 223 aaPredicted RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 CYTIPO60759 359 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 TGDSO95455 350 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 THBDP07204 575 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 CHRM4P08173 479 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 IL32P24001 234 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 IDH2P48735 452 aaKnown RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 NR1H2P55055 460 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 P2RY6Q15077 328 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 ACKR1Q16570 336 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 C6orf10Q5SRN2 563 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 CXorf67Q86X51 503 aaPredicted RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 GOLGA6L1Q8N7Z2 621 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 ATP6V1G3Q96LB4 118 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 USB1Q9BQ65 265 aaKnown RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 PSD2Q9BQI7 771 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 TPT1P8Q9HAU6 139 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 CACYBPQ9HB71 228 aaKnown RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 THUMPD1Q9NXG2 353 aaKnown RBP14.98□□□□□ -0.01
CLK3-210ENST00000563112 EMC3Q9P0I2 261 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 P2RX2Q9UBL9 471 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 HDGFL3Q9Y3E1 203 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 ROS1P08922 2347 aa14.98□□□□□ -0.01
CLK3-210ENST00000563112 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP14.97□□□□□ -0.01
CLK3-210ENST00000563112 FAM234BA2RU67 622 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 ZNF724A8MTY0 619 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 ARHGEF9O43307 516 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 KLF4O43474 513 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 BCAS1O75363 584 aaPredicted RBP14.97□□□□□ -0.01
CLK3-210ENST00000563112 FESP07332 822 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 CRISP3P54108 245 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 DSTNP60981 165 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 ADAM8P78325 824 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 SFRP5Q5T4F7 317 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 C20orf204Q6ZNR8 217 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 GALNT5Q7Z7M9 940 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 MTDHQ86UE4 582 aaKnown RBP14.97□□□□□ -0.01
CLK3-210ENST00000563112 ZNF440Q8IYI8 595 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 GABRG1Q8N1C3 465 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 DYDC1Q8WWB3 177 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 KISS1RQ969F8 398 aaPredicted RBP14.97□□□□□ -0.01
CLK3-210ENST00000563112 S100PBPQ96BU1 408 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 HS3ST6Q96QI5 342 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 PIP5K1AQ99755 562 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 NGBQ9NPG2 151 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 TCF7L2Q9NQB0 619 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 FREM1Q5H8C1 2179 aa14.97□□□□□ -0.01
CLK3-210ENST00000563112 CFAP73A6NFT4 308 aa14.96□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms