RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 EXOSC3Q9NQT5 275 aaKnown RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 CCDC167Q9P0B6 97 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 C6orf203Q9P0P8 240 aaPredicted RBP13.97□□□□□ -0.17
VPS39-203ENST00000561797 ST6GALNAC2Q9UJ37 374 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 PLEKHA6Q9Y2H5 1048 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 PCDHB14Q9Y5E9 798 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 CSMD1Q96PZ7 3565 aa13.97□□□□□ -0.17
VPS39-203ENST00000561797 CCDC168Q8NDH2 2452 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 SASH3O75995 380 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 HRGP04196 525 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 KLK2P20151 261 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 RPS4Y1P22090 263 aaKnown RBP13.96□□□□□ -0.17
VPS39-203ENST00000561797 APOBEC1P41238 236 aaKnown RBP13.96□□□□□ -0.17
VPS39-203ENST00000561797 MAGEA8P43361 318 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 PCYT1AP49585 367 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 GNA13Q14344 377 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 TESK1Q15569 626 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 SYT14P1Q58G82 188 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 RPS26P11Q5JNZ5 115 aaPredicted RBP13.96□□□□□ -0.17
VPS39-203ENST00000561797 MRPL2Q5T653 305 aaKnown RBP13.96□□□□□ -0.17
VPS39-203ENST00000561797 BEND4Q6ZU67 534 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 STK32CQ86UX6 486 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 VRK2Q86Y07 508 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 FUNDC1Q8IVP5 155 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 CMIPQ8IY22 773 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 OR52P1PQ8NH57 321 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 SLC38A5Q8WUX1 472 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 CCDC106Q9BWC9 280 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 ZNF226Q9NYT6 803 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 CALML5Q9NZT1 146 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 KLHL13Q9P2N7 655 aa13.96□□□□□ -0.17
VPS39-203ENST00000561797 OTOGQ6ZRI0 2925 aa13.96□□□□□ -0.18
VPS39-203ENST00000561797 SULT2B1O00204 365 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 CLIC1O00299 241 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 SMAD9O15198 467 aaKnown RBP13.95□□□□□ -0.18
VPS39-203ENST00000561797 GOSR1O95249 250 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 YES1P07947 543 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 TFPTP0C1Z6 253 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 DNASE1P24855 282 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 MRPL19P49406 292 aaKnown RBP13.95□□□□□ -0.18
VPS39-203ENST00000561797 DIO1P49895 249 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 CRISP3P54108 245 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 RGNQ15493 299 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 AGKQ53H12 422 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 BLOC1S3Q6QNY0 202 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 STAC2Q6ZMT1 411 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 ZNF836Q6ZNA1 936 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 TMPPEQ6ZT21 453 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 C22orf34Q6ZV56 151 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 GRINAQ7Z429 371 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 ADGRG3Q86Y34 549 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 SLC43A2Q8N370 569 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 SLC25A43Q8WUT9 341 aaPredicted RBP13.95□□□□□ -0.18
VPS39-203ENST00000561797 PMM1Q92871 262 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 ZNF775Q96BV0 537 aaPredicted RBP13.95□□□□□ -0.18
VPS39-203ENST00000561797 SPDL1Q96EA4 605 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 PIK3IP1Q96FE7 263 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 TMEM19Q96HH6 336 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 PLEKHF2Q9H8W4 249 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 RLIMQ9NVW2 624 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 CHRNA9Q9UGM1 479 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 EDARQ9UNE0 448 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 SPIN1Q9Y657 262 aaPredicted RBP13.95□□□□□ -0.18
VPS39-203ENST00000561797 PRR14LQ5THK1 2151 aa13.95□□□□□ -0.18
VPS39-203ENST00000561797 A0A096LPI6 279 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 TMED7-TICAM2A0A0A6YYA0 188 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 A0A1W2PPR1 153 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 TMEM247A6NEH6 219 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 SIAH2O43255 324 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 FESP07332 822 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 NUDT7P0C024 238 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 GKN3PP0CG01 181 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 CD1EP15812 388 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 NCF2P19878 526 aaPredicted RBP13.94□□□□□ -0.18
VPS39-203ENST00000561797 CRYGSP22914 178 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 CSNK2A1P68400 391 aaPredicted RBP13.94□□□□□ -0.18
VPS39-203ENST00000561797 RASGEF1BQ0VAM2 473 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 NINJ1Q92982 152 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 ARL5BQ96KC2 179 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 PSD2Q9BQI7 771 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 OR11A1Q9GZK7 315 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 RAD21L1Q9H4I0 556 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 FANCFQ9NPI8 374 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 THUMPD1Q9NXG2 353 aaKnown RBP13.94□□□□□ -0.18
VPS39-203ENST00000561797 SLC25A37Q9NYZ2 338 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 SLAMF8Q9P0V8 285 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 KLHL9Q9P2J3 617 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 DCTN4Q9UJW0 460 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 TMED7Q9Y3B3 224 aa13.94□□□□□ -0.18
VPS39-203ENST00000561797 DSCAMO60469 2012 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 DSPPQ9NZW4 1301 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 A0A0G2JPF8 293 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 CFAP73A6NFT4 308 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 HNRNPCL2B2RXH8 293 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 HNRNPCL3B7ZW38 293 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 CYTIPO60759 359 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 HNRNPCL1O60812 293 aaKnown RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 HNRNPCL4P0DMR1 293 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 HOXB9P17482 250 aaPredicted RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 TACR3P29371 465 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms