RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 SH2D2AQ9NP31 389 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 ANKRD10Q9NXR5 420 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 SELENONQ9NZV5 590 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 POFUT2Q9Y2G5 429 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 MSRB2Q9Y3D2 182 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 WIF1Q9Y5W5 379 aa10.23□□□□□ -0.77
USP3-218ENST00000560202 IGLV3-32A0A0A0MS00 114 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ZNF891A8MT65 544 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 H0YAE9 185 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CCL3P10147 92 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 MST1P26927 711 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 POLR2IP36954 125 aaKnown RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 CAPGP40121 348 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 RBM34P42696 430 aaKnown RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 SLC1A3P43003 542 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 SUMO3P55854 103 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 SOX8P57073 446 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 KCNAB2Q13303 367 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 TOMM34Q15785 309 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 ZNF829Q3KNS6 432 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 CRTC2Q53ET0 693 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 PRAMEF20Q5VT98 475 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 LINC00114Q6XXX2 140 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 RTL4Q6ZR62 310 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 NRMQ8IXM6 262 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 GPALPP1Q8IXQ4 340 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CYP4Z2PQ8N1L4 340 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 GALNT16Q8N428 558 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 PIGXQ8TBF5 258 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 GPR119Q8TDV5 335 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 KCNE4Q8WWG9 221 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 C3orf49Q96BT1 292 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ZNF524Q96C55 264 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 HS6ST2Q96MM7 605 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ZNF426Q9BUY5 554 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ANGPTL4Q9BY76 406 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 UCK2Q9BZX2 261 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 RIBC2Q9H4K1 309 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 HHATLQ9HCP6 504 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 PNPLA3Q9NST1 481 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 FAM118AQ9NWS6 357 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CNIH4Q9P003 139 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 PPP4R1LQ9P1A2 415 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 hCG_2014768A0A024R1R8 64 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 A0A087WUJ7 227 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ANKUB1A6NFN9 424 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 TRIM64CA6NLI5 447 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 B4DXG7 233 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 TLX3O43711 291 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 PIP5K1CO60331 668 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 PTNP21246 168 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 MSX1P28360 303 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 OMPP47874 163 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CYB561P49447 251 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 OC90Q02509 493 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 NPRL3Q12980 569 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 QPRTQ15274 297 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 KCTD21Q4G0X4 260 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 TTC23Q5W5X9 447 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 KLHL17Q6TDP4 642 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CD300LDQ6UXZ3 194 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 MDGA2Q7Z553 956 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 LSRQ86X29 649 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 PARP8Q8N3A8 854 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ZNF248Q8NDW4 579 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ZNF555Q8NEP9 628 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 GNPDA2Q8TDQ7 276 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 NTNG2Q96CW9 530 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CNBD2Q96M20 576 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 FRMD6Q96NE9 622 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 CCNL2Q96S94 520 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 GPA33Q99795 319 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 GABARAPL3Q9BY60 117 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ANKRD60Q9BZ19 345 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ADAM19Q9H013 955 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ING2Q9H160 280 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 KRCC1Q9NPI7 259 aaPredicted RBP10.22□□□□□ -0.77
USP3-218ENST00000560202 MED11Q9P086 117 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 ABI3Q9P2A4 366 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 POLHQ9Y253 713 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 B3GNT3Q9Y2A9 372 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 MYRFQ9Y2G1 1151 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 MED31Q9Y3C7 131 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 NINQ8N4C6 2090 aa10.22□□□□□ -0.77
USP3-218ENST00000560202 FREM2Q5SZK8 3169 aa10.21□□□□□ -0.77
USP3-218ENST00000560202 LOC100130705A0A1B0GUX0 176 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 GNB5O14775 395 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 SLC16A6O15403 523 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 KLK10O43240 276 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 PNMTP11086 282 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 GP1BBP13224 206 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 TACR3P29371 465 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 PRKCDQ05655 676 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 CDC20Q12834 499 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 COX10Q12887 443 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 INPP5JQ15735 1006 aaPredicted RBP10.21□□□□□ -0.78
USP3-218ENST00000560202 TTC33Q6PID6 262 aaPredicted RBP10.21□□□□□ -0.78
USP3-218ENST00000560202 ATG4DQ86TL0 474 aaPredicted RBP10.21□□□□□ -0.78
USP3-218ENST00000560202 ZNF227Q86WZ6 799 aa10.21□□□□□ -0.78
USP3-218ENST00000560202 MEX3DQ86XN8 651 aaKnown RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms