RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 ELOA3DA6NLF2 546 aaPredicted RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 GOLGA8NF8WBI6 632 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 PIP5K1BO14986 540 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 GPRIN2O60269 458 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 DNAJA2O60884 412 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 MRPL33O75394 65 aaKnown RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 SLU7O95391 586 aaKnown RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 AGR2O95994 175 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 SHBGP04278 402 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 SLC25A16P16260 332 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 COX5AP20674 150 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 CD40P25942 277 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 SERPINB5P36952 375 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 CLK1P49759 484 aaKnown RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 RNF144AP50876 292 aaPredicted RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 FABP6P51161 128 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 CHRNEQ04844 493 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 CHRNB3Q05901 458 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 LOXL1Q08397 574 aaPredicted RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 MAD2L1Q13257 205 aaPredicted RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 PCLAFQ15004 111 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 TMEM249Q2WGJ8 235 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ARHGAP11BQ3KRB8 267 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ELOA3BQ3SY89 546 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 SYT14P1Q58G82 188 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 C6orf136Q5SQH8 315 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 PDZK1Q5T2W1 519 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 C1QTNF12Q5T7M4 302 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ATAD3BQ5T9A4 648 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 IL23RQ5VWK5 629 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 C6orf120Q7Z4R8 191 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 C4orf33Q8N1A6 199 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 MUC15Q8N387 334 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 EIF1ADQ8N9N8 165 aaKnown RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 FNDC5Q8NAU1 212 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ELOA3Q8NG57 546 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ZNF563Q8TA94 476 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 OIT3Q8WWZ8 545 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 NANOS1Q8WY41 292 aaKnown RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 APH1AQ96BI3 265 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 DUSP26Q9BV47 211 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 CACNG6Q9BXT2 260 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 BEX2Q9BXY8 128 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 QRSL1Q9H0R6 528 aaKnown RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 FKRPQ9H9S5 495 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 PARPBPQ9NWS1 579 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ASB6Q9NWX5 421 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 TMEM160Q9NX00 188 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 TAS2R16Q9NYV7 291 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 LPAR3Q9UBY5 353 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 PMF1-BGLAPU3KQ54 211 aa8.09□□□□□ -1.11
HDDC3-204ENST00000559834 NUP214P35658 2090 aaPredicted RBP8.09□□□□□ -1.11
HDDC3-204ENST00000559834 ATRQ13535 2644 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 IGHV4-30-2A0A087WSY4 118 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 TMEM233B4DJY2 109 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 E7EQL1 145 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 DNPH1O43598 174 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 FCMRO60667 390 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 RAD51DO75771 328 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 H6PDO95479 791 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PMS2P2O95744 297 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 CHRNGP07510 517 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 GUSBP08236 651 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 CSF3P09919 207 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 UBTFL6P0CB48 400 aaPredicted RBP8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PTNP21246 168 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 ALDH3A1P30838 453 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 SOAT1P35610 550 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 MAGEA8P43361 318 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 ZNF83P51522 516 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 HBA1P69905 142 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 IRX1P78414 480 aaPredicted RBP8.08□□□□□ -1.12
HDDC3-204ENST00000559834 VLDLRP98155 873 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 TGFBR3Q03167 851 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 SKP2Q13309 424 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PTGR1Q14914 329 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PGS1Q32NB8 556 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 C6orf52Q5T4I8 152 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 CYB5R2Q6BCY4 276 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 ZNF544Q6NX49 715 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.08□□□□□ -1.12
HDDC3-204ENST00000559834 C16orf62Q7Z3J2 963 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PHC2Q8IXK0 858 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 VPS37AQ8NEZ2 397 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 OR5D16Q8NGK9 328 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 OR52N5Q8NH56 324 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 OR5AK3PQ8NH89 298 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PIGXQ8TBF5 258 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 FAM168AQ92567 244 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 PROX1Q92786 737 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 ZNF524Q96C55 264 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 TUBGCP3Q96CW5 907 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 MUS81Q96NY9 551 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 INPP5KQ9BT40 448 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 SHARPINQ9H0F6 387 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 POLE3Q9NRF9 147 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 NPAP1Q9NZP6 1156 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 CHRNA9Q9UGM1 479 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 MKLN1Q9UL63 735 aa8.08□□□□□ -1.12
HDDC3-204ENST00000559834 SLC35A3Q9Y2D2 325 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms