RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 HS6ST2Q96MM7 605 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 BARD1Q99728 777 aaKnown RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 FNDC11Q9BVV2 318 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 ADAM19Q9H013 955 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 IL1RAPQ9NPH3 570 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 TIGARQ9NQ88 270 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 PLSCR2Q9NRY7 297 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 PAQR5Q9NXK6 330 aaPredicted RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 ACAD8Q9UKU7 415 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 RPH3AQ9Y2J0 694 aaPredicted RBP8.36□□□□□ -1.07
LDLR-210ENST00000559340 ENPP4Q9Y6X5 453 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 MED12LQ86YW9 2145 aa8.36□□□□□ -1.07
LDLR-210ENST00000559340 DOCK7Q96N67 2140 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PCNX1Q96RV3 2341 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ATMQ13315 3056 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 TMED7-TICAM2A0A0A6YYA0 188 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 A0A1B0GWA3 101 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 DHRS12A0PJE2 317 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 HTR3EA5X5Y0 456 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ERICH4A6NGS2 130 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PRRG2O14669 202 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ZNF208O43345 1280 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 FRS3O43559 492 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 WISP1O95388 367 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 EPPINO95925 133 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 RAP2AP10114 183 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PRG2P13727 222 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ABOP16442 354 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 POU3F2P20265 443 aaPredicted RBP8.35□□□□□ -1.07
LDLR-210ENST00000559340 MST1P26927 711 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 TACR3P29371 465 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PTGS2P35354 604 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PTGER4P35408 488 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 OR1E2P47887 323 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 FOXF1Q12946 379 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 TOMM34Q15785 309 aaPredicted RBP8.35□□□□□ -1.07
LDLR-210ENST00000559340 TMEM44Q2T9K0 475 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ALG10BQ5I7T1 473 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ENTPD8Q5MY95 495 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 VASNQ6EMK4 673 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 C3orf33Q6P1S2 294 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 RRM2BQ7LG56 351 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PIWIL3Q7Z3Z3 882 aaKnown RBP8.35□□□□□ -1.07
LDLR-210ENST00000559340 ATCAYQ86WG3 371 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ZDHHC21Q8IVQ6 265 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ST6GALNAC3Q8NDV1 305 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 STK35Q8TDR2 534 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 SLC38A4Q969I6 547 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 DDIT4LQ96D03 193 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 PRRC1Q96M27 445 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ZNF300Q96RE9 604 aaPredicted RBP8.35□□□□□ -1.07
LDLR-210ENST00000559340 SEPHS2Q99611 448 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 EPYCQ99645 322 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 SLX1AQ9BQ83 275 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 POTEKPQ9BYX7 375 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 TSPAN10Q9H1Z9 355 aaPredicted RBP8.35□□□□□ -1.07
LDLR-210ENST00000559340 SLC6A15Q9H2J7 730 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 ANKRD19PQ9H560 264 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 CHRNA9Q9UGM1 479 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 RIMS3Q9UJD0 308 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 OSGIN1Q9UJX0 560 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 AURKCQ9UQB9 309 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 TMED7Q9Y3B3 224 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 V9GYQ6 96 aa8.35□□□□□ -1.07
LDLR-210ENST00000559340 DIDO1Q9BTC0 2240 aaKnown RBP8.35□□□□□ -1.07
LDLR-210ENST00000559340 A0A0B4J2E0 115 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 A0A1B0GTH9 108 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 A0A1B0GX12 115 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TCRBV5S2A0A599 114 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TCRBV3S1A0A5B6 114 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 CPSF4LA6NMK7 179 aaKnown RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 C17orf51A8MQB3 221 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 A8MVM7 634 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 AHRRA9YTQ3 701 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TMEM229AB2RXF0 380 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 H3BML4 177 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 ADAMDEC1O15204 470 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 CHP2O43745 196 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 OR2T1O43869 369 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 BCAS1O75363 584 aaPredicted RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 KRT36O76013 467 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 NTN1O95631 604 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 CELA3AP09093 270 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TFPIP10646 304 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 FCGR1AP12314 374 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 GABRA1P14867 456 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 CPN1P15169 458 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 BMP7P18075 431 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TCEA1P23193 301 aaKnown RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 SLC7A1P30825 629 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TDGF1P3P51864 188 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 MLLT10P55197 1068 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 GFRA1P56159 465 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 B3GALT5-AS1P59052 145 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 HOXC5Q00444 222 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 GK3PQ14409 553 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 MFSD13AQ14CX5 517 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 TRAM2Q15035 370 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 NPTX1Q15818 432 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 ZFP1Q6P2D0 407 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms