RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 PATL1Q86TB9 770 aaKnown RBP12.22□□□□□ -0.45
SHMT2-228ENST00000557302 CALHM3Q86XJ0 350 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 C9orf106Q8NAJ2 232 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 CCDC197Q8NCU1 140 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 ATP6V1C2Q8NEY4 427 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 BHLHE22Q8NFJ8 381 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-228ENST00000557302 OR10D3Q8NH80 312 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 OR2V1Q8NHB1 315 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 ADGRG7Q96K78 797 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF583Q96ND8 569 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 HOPXQ9BPY8 73 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-228ENST00000557302 GPATCH1Q9BRR8 931 aaKnown RBP12.22□□□□□ -0.45
SHMT2-228ENST00000557302 SLC13A4Q9UKG4 626 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 PRDM4Q9UKN5 801 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF175Q9Y473 711 aa12.22□□□□□ -0.45
SHMT2-228ENST00000557302 SPIN1Q9Y657 262 aaPredicted RBP12.22□□□□□ -0.45
SHMT2-228ENST00000557302 A0A0J9YW62 118 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 CCT8L1PA6NM43 557 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 FAM220BPB1ANY3 271 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 MFN2O95140 757 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 TGM6O95932 706 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 PRG2P13727 222 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 SHC1P29353 583 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 SLC7A1P30825 629 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 ACAA2P42765 397 aaKnown RBP12.21□□□□□ -0.45
SHMT2-228ENST00000557302 DMTNQ08495 405 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 PON3Q15166 354 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 CDSNQ15517 529 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 CTU2Q2VPK5 515 aaKnown RBP12.21□□□□□ -0.45
SHMT2-228ENST00000557302 FAM91A1Q658Y4 838 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 HBMQ6B0K9 141 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 PPP4R4Q6NUP7 873 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 PLXDC2Q6UX71 529 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 NAXEQ8NCW5 288 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 OR2T12Q8NG77 320 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 LILRB4Q8NHJ6 448 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 SLC25A43Q8WUT9 341 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-228ENST00000557302 FIG4Q92562 907 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 ZNF845Q96IR2 970 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-228ENST00000557302 ZFP3Q96NJ6 502 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 CTPS2Q9NRF8 586 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 CMTM6Q9NX76 183 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 KLHL28Q9NXS3 571 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 PLEKHB1Q9UF11 243 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-228ENST00000557302 CHRNA9Q9UGM1 479 aa12.21□□□□□ -0.45
SHMT2-228ENST00000557302 KLF2Q9Y5W3 355 aaPredicted RBP12.21□□□□□ -0.45
SHMT2-228ENST00000557302 TMED7-TICAM2A0A0A6YYA0 188 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 FAM90A27PA6NNH2 459 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 CYSRT1A8MQ03 144 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 PRSS44E7EML9 344 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 M0QX08 132 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 NDUFAB1O14561 156 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 DVL2O14641 736 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 FRS3O43559 492 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 CXCL13O43927 109 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TPST1O60507 370 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 GCM2O75603 506 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-228ENST00000557302 RCBTB2O95199 551 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 SYNGR4O95473 234 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TMIGD3P0DMS9 266 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-228ENST00000557302 FCGR2AP12318 317 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TACR3P29371 465 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 CPA2P48052 419 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 POLR2HP52434 150 aaKnown RBP12.2□□□□□ -0.46
SHMT2-228ENST00000557302 SLC7A2P52569 658 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 CARD18P57730 90 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 VEZF1Q14119 521 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 WBP2NLQ6ICG8 309 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 C8orf82Q6P1X6 216 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-228ENST00000557302 SLC15A3Q8IY34 581 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 CADM2Q8N3J6 435 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 SMYD1Q8NB12 490 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 FNDC9Q8TBE3 224 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 SLC26A7Q8TE54 656 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 OSTF1Q92882 214 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TAMM41Q96BW9 452 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 RSPO3Q9BXY4 272 aaPredicted RBP12.2□□□□□ -0.46
SHMT2-228ENST00000557302 PRRG4Q9BZD6 226 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TIGARQ9NQ88 270 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TAGLN3Q9UI15 199 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 OSGIN1Q9UJX0 560 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 MCTS1Q9ULC4 181 aaKnown RBP12.2□□□□□ -0.46
SHMT2-228ENST00000557302 USP22Q9UPT9 525 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 TMED7Q9Y3B3 224 aa12.2□□□□□ -0.46
SHMT2-228ENST00000557302 OPN1SWP03999 348 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 TFPIP10646 304 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 CCNA2P20248 432 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 BMP5P22003 454 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 CTSSP25774 331 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 FKBP2P26885 142 aaKnown RBP12.19□□□□□ -0.46
SHMT2-228ENST00000557302 HTR1EP28566 365 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 OPRM1P35372 400 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 ZNF136P52737 540 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 RGS8P57771 180 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-228ENST00000557302 PSME3P61289 254 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 HOXC5Q00444 222 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 LIPEQ05469 1076 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 SLC25A35Q3KQZ1 300 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 GLIPR1L2Q4G1C9 344 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 SYT14P1Q58G82 188 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms