RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	GABRB1	P18505	474 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	FUT1	P19526	365 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	CAMLG	P49069	296 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	LUM	P51884	338 aa	Predicted RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	CHRNE	Q04844	493 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF616	Q08AN1	781 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	GXYLT1	Q4G148	440 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	CLVS2	Q5SYC1	327 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	TSSK4	Q6SA08	328 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	NUP54	Q7Z3B4	507 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	C10orf111	Q8N326	155 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	DNAAF1	Q8NEP3	725 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF461	Q8TAF7	563 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	WFIKKN2	Q8TEU8	576 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM41A	Q96HV5	264 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	LINC00052	Q96N35	136 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	BTBD2	Q9BX70	525 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF700	Q9H0M5	742 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	SEC61A2	Q9H9S3	476 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	NOX4	Q9NPH5	578 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	WSB2	Q9NYS7	404 aa	Predicted RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	TEX13D	A0A0J9YY54	714 aa	Predicted RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ACOT7	O00154	380 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	OIP5	O43482	229 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	MED6	O75586	246 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	NTN1	O95631	604 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ITGA5	P08648	1049 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPX2	P18283	190 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	MAOA	P21397	527 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	PPM1A	P35813	382 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	MMP12	P39900	470 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	MRPL19	P49406	292 aa	Known RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	GPR143	P51810	404 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	RPS15A	P62244	130 aa	Known RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	IRF5	Q13568	498 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZBTB37	Q5TC79	503 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ARHGAP40	Q5TG30	622 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ERN2	Q76MJ5	926 aa	Known RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	PARS2	Q7L3T8	475 aa	Known RBP	4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	PM20D2	Q8IYS1	436 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	SIRT6	Q8N6T7	355 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLAIN1	Q8ND83	568 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR4C15	Q8NGM1	316 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	GHSR	Q92847	366 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ORAI1	Q96D31	301 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	ST6GALNAC5	Q9BVH7	336 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	PLA2G12A	Q9BZM1	189 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM231	Q9H6L2	316 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005		Q9N2J8	555 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	TM7SF3	Q9NS93	570 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	FTSJ1	Q9UET6	329 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	GLS2	Q9UI32	602 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	LIPT1	Q9Y234	373 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	HRH3	Q9Y5N1	445 aa		4.65	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNE1B	A0A087WTH5	132 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TRABD2B	A6NFA1	517 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TVP23A	A6NH52	213 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005		H0YIV9	168 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PMP2	P02689	132 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNJ5	P48544	419 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ERVFC1	P60507	584 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	BTG1	P62324	171 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TNK1	Q13470	666 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	LRRC69	Q6ZNQ3	347 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLCO4C1	Q6ZQN7	724 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	NDUFAF7	Q7L592	441 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PRR22	Q8IZ63	422 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MS4A15	Q8N5U1	240 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR6M1	Q8NGM8	313 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR6T1	Q8NGN1	323 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ELP5	Q8TE02	316 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ADAMTS14	Q8WXS8	1223 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SLC25A44	Q96H78	314 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	IL21R	Q9HBE5	538 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	COPS7A	Q9UBW8	275 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	MRPS33	Q9Y291	106 aa	Known RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	KCNJ13	O60928	360 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CSTA	P01040	98 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	IFNA21	P01568	189 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	H2BFM	P0C1H6	154 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	UBL4A	P11441	157 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CYHR1	Q6ZMK1	362 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF550	Q7Z398	422 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SYT9	Q86SS6	491 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TPRA1	Q86W33	373 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZNF761	Q86XN6	746 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	NKAIN4	Q8IVV8	208 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	CDH26	Q8IXH8	852 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SAMD14	Q8IZD0	417 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	OR56B4	Q8NH76	319 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	STK35	Q8TDR2	534 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	ZBTB8A	Q96BR9	441 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	NEURL3	Q96EH8	262 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SCGB3A2	Q96PL1	93 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SERINC2	Q96SA4	455 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	PFDN5	Q99471	154 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	WDR77	Q9BQA1	342 aa	Predicted RBP	4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	SGIP1	Q9BQI5	828 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	BARHL1	Q9BZE3	327 aa		4.64	□□□□□ -1.67
SYNE2-223	ENST00000557005	TMEM168	Q9H0V1	697 aa		4.64	□□□□□ -1.67

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