RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 TNFRSF12AQ9NP84 129 aa11.13□□□□□ -0.63
SHMT2-223ENST00000556689 ASB6Q9NWX5 421 aa11.13□□□□□ -0.63
SHMT2-223ENST00000556689 EMC3Q9P0I2 261 aa11.13□□□□□ -0.63
SHMT2-223ENST00000556689 NOSIPQ9Y314 301 aaKnown RBP11.13□□□□□ -0.63
SHMT2-223ENST00000556689 DTNAQ9Y4J8 743 aa11.13□□□□□ -0.63
SHMT2-223ENST00000556689 IGKV3D-15A0A087WSY6 115 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 A0A1W2PR80 420 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 SLC35F4A4IF30 521 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 G3V2L1 256 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 SULT2B1O00204 365 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 ETV2O00321 342 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 SDC1P18827 310 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 EFNA1P20827 205 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 DIO1P49895 249 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 PDLIM4P50479 330 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 GGTLC2Q14390 218 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 TIGD2Q4W5G0 525 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 RFTN2Q52LD8 501 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 DCST2Q5T1A1 773 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 ZYG11AQ6WRX3 759 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 FRMD7Q6ZUT3 714 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 R3HCC1LQ7Z5L2 792 aaKnown RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 MTDHQ86UE4 582 aaKnown RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 TMCO5AQ8N6Q1 288 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 CLHC1Q8NHS4 586 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 APH1AQ96BI3 265 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 MSI2Q96DH6 328 aaKnown RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 MTERF3Q96E29 417 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 FCRL1Q96LA6 429 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 ZIM3Q96PE6 472 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 SIRT3Q9NTG7 399 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 TAS2R16Q9NYV7 291 aa11.12□□□□□ -0.63
SHMT2-223ENST00000556689 FAF1Q9UNN5 650 aaPredicted RBP11.12□□□□□ -0.63
SHMT2-223ENST00000556689 VWC2LB2RUY7 222 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 NPIPB9F8W1W9 429 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 NDUFS8O00217 210 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 LY6HO94772 140 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 H6PDO95479 791 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 SHBGP04278 402 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 PGRP06401 933 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 KRT16P08779 473 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 UBL4AP11441 157 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 NR4A2P43354 598 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 ASMTP46597 345 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 CCT3P49368 545 aaKnown RBP11.11□□□□□ -0.63
SHMT2-223ENST00000556689 CCR4P51679 360 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 DNAJB13P59910 316 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 GABRA6Q16445 453 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 CLEC6AQ6EIG7 209 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 EPS8L3Q8TE67 593 aaKnown RBP11.11□□□□□ -0.63
SHMT2-223ENST00000556689 PIMREGQ9BSJ6 248 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 THUMPD3Q9BV44 507 aaKnown RBP11.11□□□□□ -0.63
SHMT2-223ENST00000556689 TMEM109Q9BVC6 243 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 PRR14Q9BWN1 585 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 QRSL1Q9H0R6 528 aaKnown RBP11.11□□□□□ -0.63
SHMT2-223ENST00000556689 EML4Q9HC35 981 aaKnown RBP11.11□□□□□ -0.63
SHMT2-223ENST00000556689 MED4Q9NPJ6 270 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 EMCNQ9ULC0 261 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 TMED5Q9Y3A6 229 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 PTGDR2Q9Y5Y4 395 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 KCNE3Q9Y6H6 103 aa11.11□□□□□ -0.63
SHMT2-223ENST00000556689 SERINC4A6NH21 518 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 GPR171O14626 319 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 KIAA0513O60268 411 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 MRPL33O75394 65 aaKnown RBP11.1□□□□□ -0.63
SHMT2-223ENST00000556689 CYP7B1O75881 506 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 TGFAP01135 160 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 LINC00032P0C843 101 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 APEHP13798 732 aaKnown RBP11.1□□□□□ -0.63
SHMT2-223ENST00000556689 SESN3P58005 492 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 RUNX1T1Q06455 604 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 MERTKQ12866 999 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 SYT14P1Q58G82 188 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 WDR31Q8NA23 367 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 OR2T11Q8NH01 316 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 SLC25A43Q8WUT9 341 aaPredicted RBP11.1□□□□□ -0.63
SHMT2-223ENST00000556689 TMEM234Q8WY98 164 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 OR5P2Q8WZ92 322 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 ST8SIA1Q92185 356 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 ZHX1-C8orf76Q96EF9 292 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 FOXN4Q96NZ1 517 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 TRMOQ9BU70 441 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 LAT2Q9GZY6 243 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 ACER3Q9NUN7 267 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 TBK1Q9UHD2 729 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 ATP6V1HQ9UI12 483 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 FKBP7Q9Y680 259 aa11.1□□□□□ -0.63
SHMT2-223ENST00000556689 YLPM1P49750 1951 aaKnown RBP11.1□□□□□ -0.63
SHMT2-223ENST00000556689 LOC390937A0A1W2PQ73 354 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 ZNF716A6NP11 495 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 AZIN1O14977 448 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 LSM1O15116 133 aaKnown RBP11.09□□□□□ -0.63
SHMT2-223ENST00000556689 DNAJA2O60884 412 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 CHEK2O96017 543 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 TFPIP10646 304 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 NEFHP12036 1026 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 BCKDHAP12694 445 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 PGCP20142 388 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 NTF4P34130 210 aa11.09□□□□□ -0.63
SHMT2-223ENST00000556689 RPL38P63173 70 aaKnown RBP11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms